RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 NISCHQ9Y2I1 1504 aa35.48■■■■□ 3.27
HERPUD1-201ENST00000300302 CCDC180Q9P1Z9 1646 aa30.96■■■□□ 2.55
HERPUD1-201ENST00000300302 ZCCHC6Q5VYS8 1495 aaKnown RBP29.81■■■□□ 2.36
HERPUD1-201ENST00000300302 ABCC9O60706 1549 aa29.55■■■□□ 2.32
HERPUD1-201ENST00000300302 DCAF1Q9Y4B6 1507 aa29.36■■■□□ 2.29
HERPUD1-201ENST00000300302 DCAF8L2P0C7V8 631 aa29.33■■■□□ 2.29
HERPUD1-201ENST00000300302 MYO15BQ96JP2 1530 aa29.02■■■□□ 2.24
HERPUD1-201ENST00000300302 SHROOM4Q9ULL8 1493 aa28.93■■■□□ 2.22
HERPUD1-201ENST00000300302 NACADO15069 1562 aa28.83■■■□□ 2.21
HERPUD1-201ENST00000300302 RB1CC1Q8TDY2 1594 aa28.63■■■□□ 2.17
HERPUD1-201ENST00000300302 SCRIBQ14160 1630 aa28.44■■■□□ 2.14
HERPUD1-201ENST00000300302 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
HERPUD1-201ENST00000300302 SUPT5HO00267 1087 aaKnown RBP27.87■■■□□ 2.05
HERPUD1-201ENST00000300302 PABPN1Q86U42 306 aaKnown RBP eCLIP27.86■■■□□ 2.05
HERPUD1-201ENST00000300302 BICRAQ9NZM4 1560 aa27.8■■■□□ 2.04
HERPUD1-201ENST00000300302 CECR2Q9BXF3 1484 aa27.53■■■□□ 2
HERPUD1-201ENST00000300302 RSF1Q96T23 1441 aaPredicted RBP27.53■■■□□ 2
HERPUD1-201ENST00000300302 BAZ1AQ9NRL2 1556 aaPredicted RBP27.42■■□□□ 1.98
HERPUD1-201ENST00000300302 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.97
HERPUD1-201ENST00000300302 SMARCA4P51532 1647 aa27.27■■□□□ 1.96
HERPUD1-201ENST00000300302 WIZO95785 1651 aa27.17■■□□□ 1.94
HERPUD1-201ENST00000300302 EIF4G1Q04637 1599 aaKnown RBP26.99■■□□□ 1.91
HERPUD1-201ENST00000300302 PEG3Q9GZU2 1588 aa26.95■■□□□ 1.91
HERPUD1-201ENST00000300302 TOP2AP11388 1531 aaKnown RBP26.92■■□□□ 1.9
HERPUD1-201ENST00000300302 SMARCA2P51531 1590 aa26.84■■□□□ 1.89
HERPUD1-201ENST00000300302 ATAD2BQ9ULI0 1458 aa26.82■■□□□ 1.88
HERPUD1-201ENST00000300302 BAZ1BQ9UIG0 1483 aaKnown RBP26.69■■□□□ 1.86
HERPUD1-201ENST00000300302 CHIC1Q5VXU3 224 aa26.68■■□□□ 1.86
HERPUD1-201ENST00000300302 CC2D2AQ9P2K1 1620 aa26.68■■□□□ 1.86
HERPUD1-201ENST00000300302 CCDC88BA6NC98 1476 aa26.63■■□□□ 1.85
HERPUD1-201ENST00000300302 NCAPD3P42695 1498 aa26.61■■□□□ 1.85
HERPUD1-201ENST00000300302 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
HERPUD1-201ENST00000300302 DNAJC5BQ9UF47 199 aa26.41■■□□□ 1.82
HERPUD1-201ENST00000300302 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
HERPUD1-201ENST00000300302 ABCC8Q09428 1581 aa26.06■■□□□ 1.76
HERPUD1-201ENST00000300302 CFTRP13569 1480 aa26.01■■□□□ 1.75
HERPUD1-201ENST00000300302 WRNQ14191 1432 aaPredicted RBP eCLIP25.94■■□□□ 1.74
HERPUD1-201ENST00000300302 CADPSQ9ULU8 1353 aa25.93■■□□□ 1.74
HERPUD1-201ENST00000300302 PRDM2Q13029 1718 aa25.89■■□□□ 1.74
HERPUD1-201ENST00000300302 NESP48681 1621 aa25.84■■□□□ 1.73
HERPUD1-201ENST00000300302 SYNJ1O43426 1573 aa25.79■■□□□ 1.72
HERPUD1-201ENST00000300302 LAMC3Q9Y6N6 1575 aa25.73■■□□□ 1.71
HERPUD1-201ENST00000300302 FAM9AQ8IZU1 332 aaPredicted RBP25.72■■□□□ 1.71
HERPUD1-201ENST00000300302 TOP2BQ02880 1626 aa25.72■■□□□ 1.71
HERPUD1-201ENST00000300302 BIVM-ERCC5R4GMW8 1640 aa25.68■■□□□ 1.7
HERPUD1-201ENST00000300302 FANCD2Q9BXW9 1451 aa25.65■■□□□ 1.7
HERPUD1-201ENST00000300302 LOC105371045A0A1W2PR82 267 aa25.64■■□□□ 1.7
HERPUD1-201ENST00000300302 CUX1P39880 1505 aa25.62■■□□□ 1.69
HERPUD1-201ENST00000300302 EEA1Q15075 1411 aa25.61■■□□□ 1.69
HERPUD1-201ENST00000300302 SOGA1O94964 1423 aa25.58■■□□□ 1.69
HERPUD1-201ENST00000300302 PDS5BQ9NTI5 1447 aa25.58■■□□□ 1.69
HERPUD1-201ENST00000300302 CEP164Q9UPV0 1460 aa25.5■■□□□ 1.67
HERPUD1-201ENST00000300302 RUSC2Q8N2Y8 1516 aa25.46■■□□□ 1.67
HERPUD1-201ENST00000300302 KIF21AQ7Z4S6 1674 aa25.44■■□□□ 1.66
HERPUD1-201ENST00000300302 CSRNP3Q8WYN3 585 aa25.44■■□□□ 1.66
HERPUD1-201ENST00000300302 DNMBPQ6XZF7 1577 aa25.41■■□□□ 1.66
HERPUD1-201ENST00000300302 URB2Q14146 1524 aaKnown RBP25.35■■□□□ 1.65
HERPUD1-201ENST00000300302 TOPBP1Q92547 1522 aa25.35■■□□□ 1.65
HERPUD1-201ENST00000300302 ERCC6Q03468 1493 aa25.35■■□□□ 1.65
HERPUD1-201ENST00000300302 FGD5Q6ZNL6 1462 aa25.35■■□□□ 1.65
HERPUD1-201ENST00000300302 EHMT2Q96KQ7 1210 aa25.34■■□□□ 1.65
HERPUD1-201ENST00000300302 KIF27Q86VH2 1401 aa25.3■■□□□ 1.64
HERPUD1-201ENST00000300302 MRC2Q9UBG0 1479 aa25.27■■□□□ 1.64
HERPUD1-201ENST00000300302 KIF21BO75037 1637 aa25.25■■□□□ 1.63
HERPUD1-201ENST00000300302 GOLGA3Q08378 1498 aa25.23■■□□□ 1.63
HERPUD1-201ENST00000300302 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
HERPUD1-201ENST00000300302 CUX2O14529 1486 aa25.2■■□□□ 1.62
HERPUD1-201ENST00000300302 TNIKQ9UKE5 1360 aa25.15■■□□□ 1.62
HERPUD1-201ENST00000300302 ABCA10Q8WWZ4 1543 aa25.14■■□□□ 1.62
HERPUD1-201ENST00000300302 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.62
HERPUD1-201ENST00000300302 UBTFP17480 764 aaKnown RBP25.13■■□□□ 1.61
HERPUD1-201ENST00000300302 WDR62O43379 1518 aa25.13■■□□□ 1.61
HERPUD1-201ENST00000300302 THOC2Q8NI27 1593 aaKnown RBP25.12■■□□□ 1.61
HERPUD1-201ENST00000300302 PRXQ9BXM0 1461 aa25.1■■□□□ 1.61
HERPUD1-201ENST00000300302 ERICH3Q5RHP9 1530 aa25.08■■□□□ 1.61
HERPUD1-201ENST00000300302 RAPGEF2Q9Y4G8 1499 aa25.06■■□□□ 1.6
HERPUD1-201ENST00000300302 WDR97A6NE52 1622 aa25.03■■□□□ 1.6
HERPUD1-201ENST00000300302 IGF1RP08069 1367 aa25.03■■□□□ 1.6
HERPUD1-201ENST00000300302 CEP162Q5TB80 1403 aa25.01■■□□□ 1.59
HERPUD1-201ENST00000300302 TARBP1Q13395 1621 aaKnown RBP24.96■■□□□ 1.59
HERPUD1-201ENST00000300302 TDRD9Q8NDG6 1382 aaKnown RBP24.93■■□□□ 1.58
HERPUD1-201ENST00000300302 CARMIL1Q5VZK9 1371 aa24.93■■□□□ 1.58
HERPUD1-201ENST00000300302 ABCA5Q8WWZ7 1642 aa24.92■■□□□ 1.58
HERPUD1-201ENST00000300302 IFT140Q96RY7 1462 aa24.9■■□□□ 1.58
HERPUD1-201ENST00000300302 GAPVD1Q14C86 1478 aa24.89■■□□□ 1.57
HERPUD1-201ENST00000300302 CUL7Q14999 1698 aa24.88■■□□□ 1.57
HERPUD1-201ENST00000300302 ZNF608Q9ULD9 1512 aaPredicted RBP24.83■■□□□ 1.57
HERPUD1-201ENST00000300302 CLIP1P30622 1438 aa24.82■■□□□ 1.56
HERPUD1-201ENST00000300302 AQRO60306 1485 aaKnown RBP eCLIP24.82■■□□□ 1.564e-7■■■■■ 42.8
HERPUD1-201ENST00000300302 PBRM1Q86U86 1689 aa24.74■■□□□ 1.55
HERPUD1-201ENST00000300302 GRIN2BQ13224 1484 aa24.69■■□□□ 1.54
HERPUD1-201ENST00000300302 EIF4G3O43432 1585 aaKnown RBP24.68■■□□□ 1.54
HERPUD1-201ENST00000300302 RANGAP1P46060 587 aaPredicted RBP24.68■■□□□ 1.54
HERPUD1-201ENST00000300302 FHAD1B1AJZ9 1412 aa24.62■■□□□ 1.53
HERPUD1-201ENST00000300302 VPS8Q8N3P4 1428 aa24.61■■□□□ 1.53
HERPUD1-201ENST00000300302 ADAMTS12P58397 1594 aa24.6■■□□□ 1.53
HERPUD1-201ENST00000300302 CTTNBP2Q8WZ74 1663 aa24.59■■□□□ 1.53
HERPUD1-201ENST00000300302 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
HERPUD1-201ENST00000300302 TRIM26Q12899 539 aaPredicted RBP24.56■■□□□ 1.52
HERPUD1-201ENST00000300302 ARAP1Q96P48 1450 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms