RNA–Protein interactions for RNA: ENST00000626828.1

UBE3D-208, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5 BASIC

Gene UBE3D, Length 114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-208ENST00000626828 NISCHQ9Y2I1 1504 aa40.54■■■■■ 4.08
UBE3D-208ENST00000626828 CCDC180Q9P1Z9 1646 aa36.01■■■■□ 3.35
UBE3D-208ENST00000626828 ABCC9O60706 1549 aa35.37■■■■□ 3.25
UBE3D-208ENST00000626828 DCAF8L2P0C7V8 631 aa34.09■■■■□ 3.05
UBE3D-208ENST00000626828 RB1CC1Q8TDY2 1594 aa33.98■■■■□ 3.03
UBE3D-208ENST00000626828 NACADO15069 1562 aa33.94■■■■□ 3.02
UBE3D-208ENST00000626828 MYO15BQ96JP2 1530 aa33.73■■■□□ 2.99
UBE3D-208ENST00000626828 ZCCHC6Q5VYS8 1495 aaKnown RBP33.69■■■□□ 2.98
UBE3D-208ENST00000626828 DCAF1Q9Y4B6 1507 aa33.54■■■□□ 2.96
UBE3D-208ENST00000626828 UNC13AQ9UPW8 1703 aa33.14■■■□□ 2.89
UBE3D-208ENST00000626828 PABPN1Q86U42 306 aaKnown RBP eCLIP33.13■■■□□ 2.89
UBE3D-208ENST00000626828 BICRAQ9NZM4 1560 aa32.92■■■□□ 2.86
UBE3D-208ENST00000626828 SCRIBQ14160 1630 aa32.84■■■□□ 2.85
UBE3D-208ENST00000626828 DNAJC5BQ9UF47 199 aa32.62■■■□□ 2.81
UBE3D-208ENST00000626828 SHROOM4Q9ULL8 1493 aa32.59■■■□□ 2.81
UBE3D-208ENST00000626828 EIF4G1Q04637 1599 aaKnown RBP32.07■■■□□ 2.72
UBE3D-208ENST00000626828 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
UBE3D-208ENST00000626828 CECR2Q9BXF3 1484 aa31.81■■■□□ 2.68
UBE3D-208ENST00000626828 SMARCA4P51532 1647 aa31.42■■■□□ 2.62
UBE3D-208ENST00000626828 BAZ1AQ9NRL2 1556 aaPredicted RBP31.42■■■□□ 2.62
UBE3D-208ENST00000626828 NCAPD3P42695 1498 aa31.36■■■□□ 2.61
UBE3D-208ENST00000626828 ATAD2BQ9ULI0 1458 aa31.33■■■□□ 2.61
UBE3D-208ENST00000626828 SMARCA2P51531 1590 aa31.28■■■□□ 2.6
UBE3D-208ENST00000626828 MROH2BQ7Z745 1585 aa31.22■■■□□ 2.59
UBE3D-208ENST00000626828 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
UBE3D-208ENST00000626828 HMGXB3Q12766 1538 aa31.11■■■□□ 2.57
UBE3D-208ENST00000626828 BAZ1BQ9UIG0 1483 aaKnown RBP31.06■■■□□ 2.56
UBE3D-208ENST00000626828 RSF1Q96T23 1441 aaPredicted RBP30.89■■■□□ 2.53
UBE3D-208ENST00000626828 WIZO95785 1651 aa30.87■■■□□ 2.53
UBE3D-208ENST00000626828 NESP48681 1621 aa30.57■■■□□ 2.48
UBE3D-208ENST00000626828 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
UBE3D-208ENST00000626828 ERCC6Q03468 1493 aa30.51■■■□□ 2.48
UBE3D-208ENST00000626828 LAMC3Q9Y6N6 1575 aa30.49■■■□□ 2.47
UBE3D-208ENST00000626828 CADPSQ9ULU8 1353 aa30.47■■■□□ 2.47
UBE3D-208ENST00000626828 PDS5BQ9NTI5 1447 aa30.37■■■□□ 2.45
UBE3D-208ENST00000626828 CCDC88BA6NC98 1476 aa30.24■■■□□ 2.43
UBE3D-208ENST00000626828 CFTRP13569 1480 aa30.22■■■□□ 2.43
UBE3D-208ENST00000626828 CUX2O14529 1486 aa30.2■■■□□ 2.43
UBE3D-208ENST00000626828 SUPT5HO00267 1087 aaKnown RBP30.16■■■□□ 2.42
UBE3D-208ENST00000626828 KIF21AQ7Z4S6 1674 aa30.14■■■□□ 2.42
UBE3D-208ENST00000626828 FANCD2Q9BXW9 1451 aa30.06■■■□□ 2.4
UBE3D-208ENST00000626828 THOC2Q8NI27 1593 aaKnown RBP30.04■■■□□ 2.4
UBE3D-208ENST00000626828 CEP164Q9UPV0 1460 aa30.01■■■□□ 2.4
UBE3D-208ENST00000626828 MRC2Q9UBG0 1479 aa29.98■■■□□ 2.39
UBE3D-208ENST00000626828 PRDM2Q13029 1718 aa29.88■■■□□ 2.37
UBE3D-208ENST00000626828 WDR62O43379 1518 aa29.85■■■□□ 2.37
UBE3D-208ENST00000626828 URB2Q14146 1524 aaKnown RBP29.73■■■□□ 2.35
UBE3D-208ENST00000626828 ABCC8Q09428 1581 aa29.63■■■□□ 2.33
UBE3D-208ENST00000626828 TOPBP1Q92547 1522 aa29.55■■■□□ 2.32
UBE3D-208ENST00000626828 DNAJC5Q9H3Z4 198 aa29.5■■■□□ 2.31
UBE3D-208ENST00000626828 DNMBPQ6XZF7 1577 aa29.49■■■□□ 2.31
UBE3D-208ENST00000626828 IFT140Q96RY7 1462 aa29.42■■■□□ 2.3
UBE3D-208ENST00000626828 POLA1P09884 1462 aaPredicted RBP29.29■■■□□ 2.28
UBE3D-208ENST00000626828 CUX1P39880 1505 aa29.28■■■□□ 2.28
UBE3D-208ENST00000626828 SOGA1O94964 1423 aa29.27■■■□□ 2.28
UBE3D-208ENST00000626828 ZNF608Q9ULD9 1512 aaPredicted RBP29.25■■■□□ 2.27
UBE3D-208ENST00000626828 FGD5Q6ZNL6 1462 aa29.21■■■□□ 2.27
UBE3D-208ENST00000626828 TARBP1Q13395 1621 aaKnown RBP29.2■■■□□ 2.27
UBE3D-208ENST00000626828 RAD54L2Q9Y4B4 1467 aa29.19■■■□□ 2.26
UBE3D-208ENST00000626828 AQRO60306 1485 aaKnown RBP eCLIP29.14■■■□□ 2.26
UBE3D-208ENST00000626828 WRNQ14191 1432 aaPredicted RBP eCLIP29.13■■■□□ 2.25
UBE3D-208ENST00000626828 OSCARQ8IYS5 282 aa29.1■■■□□ 2.25
UBE3D-208ENST00000626828 TDRD9Q8NDG6 1382 aaKnown RBP29.1■■■□□ 2.25
UBE3D-208ENST00000626828 EIF4G3O43432 1585 aaKnown RBP29.06■■■□□ 2.24
UBE3D-208ENST00000626828 TOP2BQ02880 1626 aa29.02■■■□□ 2.24
UBE3D-208ENST00000626828 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
UBE3D-208ENST00000626828 BIVM-ERCC5R4GMW8 1640 aa28.98■■■□□ 2.23
UBE3D-208ENST00000626828 SYNJ1O43426 1573 aa28.96■■■□□ 2.23
UBE3D-208ENST00000626828 ABCA10Q8WWZ4 1543 aa28.94■■■□□ 2.22
UBE3D-208ENST00000626828 FBLN2P98095 1184 aa28.89■■■□□ 2.22
UBE3D-208ENST00000626828 GRIN2BQ13224 1484 aa28.88■■■□□ 2.21
UBE3D-208ENST00000626828 GAPVD1Q14C86 1478 aa28.88■■■□□ 2.21
UBE3D-208ENST00000626828 CHMP7Q8WUX9 453 aaPredicted RBP28.82■■■□□ 2.2
UBE3D-208ENST00000626828 SNAPC4Q5SXM2 1469 aa28.79■■■□□ 2.2
UBE3D-208ENST00000626828 MAGI1Q96QZ7 1491 aaPredicted RBP28.79■■■□□ 2.2
UBE3D-208ENST00000626828 ABCA5Q8WWZ7 1642 aa28.76■■■□□ 2.19
UBE3D-208ENST00000626828 CHD1O14646 1710 aa28.73■■■□□ 2.19
UBE3D-208ENST00000626828 PBRM1Q86U86 1689 aa28.71■■■□□ 2.19
UBE3D-208ENST00000626828 SYNJ2O15056 1496 aa28.69■■■□□ 2.18
UBE3D-208ENST00000626828 ERICH3Q5RHP9 1530 aa28.59■■■□□ 2.17
UBE3D-208ENST00000626828 FHAD1B1AJZ9 1412 aa28.55■■■□□ 2.16
UBE3D-208ENST00000626828 KIF27Q86VH2 1401 aa28.55■■■□□ 2.16
UBE3D-208ENST00000626828 TRIM41Q8WV44 630 aa28.51■■■□□ 2.15
UBE3D-208ENST00000626828 IGF1RP08069 1367 aa28.49■■■□□ 2.15
UBE3D-208ENST00000626828 ADAMTS12P58397 1594 aa28.48■■■□□ 2.15
UBE3D-208ENST00000626828 GRIN2AQ12879 1464 aa28.47■■■□□ 2.15
UBE3D-208ENST00000626828 ARHGEF11O15085 1522 aa28.44■■■□□ 2.14
UBE3D-208ENST00000626828 RIMBP3CA6NJZ7 1639 aa28.44■■■□□ 2.14
UBE3D-208ENST00000626828 RIMBP3BA6NNM3 1639 aa28.44■■■□□ 2.14
UBE3D-208ENST00000626828 RIMBP3Q9UFD9 1639 aa28.44■■■□□ 2.14
UBE3D-208ENST00000626828 CLASP1Q7Z460 1538 aa28.43■■■□□ 2.14
UBE3D-208ENST00000626828 NUP160Q12769 1436 aa28.36■■■□□ 2.13
UBE3D-208ENST00000626828 CYB5RLQ6IPT4 315 aa28.34■■■□□ 2.13
UBE3D-208ENST00000626828 CARMIL1Q5VZK9 1371 aa28.31■■■□□ 2.12
UBE3D-208ENST00000626828 CEP170Q5SW79 1584 aa28.29■■■□□ 2.12
UBE3D-208ENST00000626828 CUL7Q14999 1698 aa28.28■■■□□ 2.12
UBE3D-208ENST00000626828 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
UBE3D-208ENST00000626828 JPH4Q96JJ6 628 aa28.22■■■□□ 2.11
UBE3D-208ENST00000626828 ARAP1Q96P48 1450 aa28.2■■■□□ 2.1
UBE3D-208ENST00000626828 KIAA0586Q9BVV6 1533 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms