RNA–Protein interactions for RNA: ENST00000527149.5

SMCO4-204, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCO4, Length 472 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-204ENST00000527149 NISCHQ9Y2I1 1504 aa40.19■■■■■ 4.02
SMCO4-204ENST00000527149 CCDC180Q9P1Z9 1646 aa35.63■■■■□ 3.29
SMCO4-204ENST00000527149 ABCC9O60706 1549 aa34.45■■■■□ 3.1
SMCO4-204ENST00000527149 ZCCHC6Q5VYS8 1495 aaKnown RBP33.6■■■□□ 2.97
SMCO4-204ENST00000527149 NACADO15069 1562 aa33.37■■■□□ 2.93
SMCO4-204ENST00000527149 MYO15BQ96JP2 1530 aa33.33■■■□□ 2.93
SMCO4-204ENST00000527149 DCAF1Q9Y4B6 1507 aa33.31■■■□□ 2.92
SMCO4-204ENST00000527149 RB1CC1Q8TDY2 1594 aa33.3■■■□□ 2.92
SMCO4-204ENST00000527149 DCAF8L2P0C7V8 631 aa33.18■■■□□ 2.9
SMCO4-204ENST00000527149 UNC13AQ9UPW8 1703 aa32.65■■■□□ 2.82
SMCO4-204ENST00000527149 SCRIBQ14160 1630 aa32.48■■■□□ 2.79
SMCO4-204ENST00000527149 BICRAQ9NZM4 1560 aa32.38■■■□□ 2.77
SMCO4-204ENST00000527149 PABPN1Q86U42 306 aaKnown RBP eCLIP32.18■■■□□ 2.74
SMCO4-204ENST00000527149 SHROOM4Q9ULL8 1493 aa32.03■■■□□ 2.72
SMCO4-204ENST00000527149 EIF4G1Q04637 1599 aaKnown RBP31.44■■■□□ 2.62
SMCO4-204ENST00000527149 DNAJC5BQ9UF47 199 aa31.32■■■□□ 2.6
SMCO4-204ENST00000527149 CECR2Q9BXF3 1484 aa31.27■■■□□ 2.6
SMCO4-204ENST00000527149 CC2D2AQ9P2K1 1620 aa31.22■■■□□ 2.59
SMCO4-204ENST00000527149 SMARCA4P51532 1647 aa31.14■■■□□ 2.58
SMCO4-204ENST00000527149 BAZ1AQ9NRL2 1556 aaPredicted RBP31.11■■■□□ 2.57
SMCO4-204ENST00000527149 MROH2BQ7Z745 1585 aa31■■■□□ 2.55
SMCO4-204ENST00000527149 PEG3Q9GZU2 1588 aa30.87■■■□□ 2.53
SMCO4-204ENST00000527149 ATAD2BQ9ULI0 1458 aa30.86■■■□□ 2.53
SMCO4-204ENST00000527149 SMARCA2P51531 1590 aa30.82■■■□□ 2.52
SMCO4-204ENST00000527149 NCAPD3P42695 1498 aa30.78■■■□□ 2.52
SMCO4-204ENST00000527149 RSF1Q96T23 1441 aaPredicted RBP30.73■■■□□ 2.51
SMCO4-204ENST00000527149 HMGXB3Q12766 1538 aa30.71■■■□□ 2.51
SMCO4-204ENST00000527149 WIZO95785 1651 aa30.66■■■□□ 2.5
SMCO4-204ENST00000527149 BAZ1BQ9UIG0 1483 aaKnown RBP30.58■■■□□ 2.49
SMCO4-204ENST00000527149 TOP2AP11388 1531 aaKnown RBP30.37■■■□□ 2.45
SMCO4-204ENST00000527149 SUPT5HO00267 1087 aaKnown RBP30.03■■■□□ 2.4
SMCO4-204ENST00000527149 CCDC88BA6NC98 1476 aa29.98■■■□□ 2.39
SMCO4-204ENST00000527149 NESP48681 1621 aa29.95■■■□□ 2.38
SMCO4-204ENST00000527149 LAMC3Q9Y6N6 1575 aa29.92■■■□□ 2.38
SMCO4-204ENST00000527149 CADPSQ9ULU8 1353 aa29.86■■■□□ 2.37
SMCO4-204ENST00000527149 CFTRP13569 1480 aa29.8■■■□□ 2.36
SMCO4-204ENST00000527149 PRDM2Q13029 1718 aa29.66■■■□□ 2.34
SMCO4-204ENST00000527149 PDS5BQ9NTI5 1447 aa29.63■■■□□ 2.33
SMCO4-204ENST00000527149 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
SMCO4-204ENST00000527149 ERCC6Q03468 1493 aa29.61■■■□□ 2.33
SMCO4-204ENST00000527149 FANCD2Q9BXW9 1451 aa29.54■■■□□ 2.32
SMCO4-204ENST00000527149 THOC2Q8NI27 1593 aaKnown RBP29.49■■■□□ 2.31
SMCO4-204ENST00000527149 CEP164Q9UPV0 1460 aa29.47■■■□□ 2.31
SMCO4-204ENST00000527149 MRC2Q9UBG0 1479 aa29.37■■■□□ 2.29
SMCO4-204ENST00000527149 WDR62O43379 1518 aa29.31■■■□□ 2.28
SMCO4-204ENST00000527149 URB2Q14146 1524 aaKnown RBP29.27■■■□□ 2.28
SMCO4-204ENST00000527149 CUX2O14529 1486 aa29.25■■■□□ 2.27
SMCO4-204ENST00000527149 TOPBP1Q92547 1522 aa29.14■■■□□ 2.25
SMCO4-204ENST00000527149 DNMBPQ6XZF7 1577 aa29.13■■■□□ 2.25
SMCO4-204ENST00000527149 ABCC8Q09428 1581 aa29.09■■■□□ 2.25
SMCO4-204ENST00000527149 CUX1P39880 1505 aa29.06■■■□□ 2.24
SMCO4-204ENST00000527149 WRNQ14191 1432 aaPredicted RBP eCLIP28.94■■■□□ 2.22
SMCO4-204ENST00000527149 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
SMCO4-204ENST00000527149 POLA1P09884 1462 aaPredicted RBP28.91■■■□□ 2.22
SMCO4-204ENST00000527149 BIVM-ERCC5R4GMW8 1640 aa28.91■■■□□ 2.22
SMCO4-204ENST00000527149 TOP2BQ02880 1626 aa28.89■■■□□ 2.22
SMCO4-204ENST00000527149 FGD5Q6ZNL6 1462 aa28.88■■■□□ 2.21
SMCO4-204ENST00000527149 IFT140Q96RY7 1462 aa28.84■■■□□ 2.21
SMCO4-204ENST00000527149 TARBP1Q13395 1621 aaKnown RBP28.83■■■□□ 2.21
SMCO4-204ENST00000527149 RAD54L2Q9Y4B4 1467 aa28.75■■■□□ 2.19
SMCO4-204ENST00000527149 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
SMCO4-204ENST00000527149 SOGA1O94964 1423 aa28.71■■■□□ 2.19
SMCO4-204ENST00000527149 ZNF608Q9ULD9 1512 aaPredicted RBP28.71■■■□□ 2.19
SMCO4-204ENST00000527149 EIF4G3O43432 1585 aaKnown RBP28.64■■■□□ 2.18
SMCO4-204ENST00000527149 ABCA10Q8WWZ4 1543 aa28.63■■■□□ 2.17
SMCO4-204ENST00000527149 AQRO60306 1485 aaKnown RBP eCLIP28.54■■■□□ 2.16
SMCO4-204ENST00000527149 ABCA5Q8WWZ7 1642 aa28.54■■■□□ 2.16
SMCO4-204ENST00000527149 TDRD9Q8NDG6 1382 aaKnown RBP28.52■■■□□ 2.16
SMCO4-204ENST00000527149 GAPVD1Q14C86 1478 aa28.42■■■□□ 2.14
SMCO4-204ENST00000527149 PBRM1Q86U86 1689 aa28.41■■■□□ 2.14
SMCO4-204ENST00000527149 GRIN2BQ13224 1484 aa28.38■■■□□ 2.13
SMCO4-204ENST00000527149 TRIM41Q8WV44 630 aa28.35■■■□□ 2.13
SMCO4-204ENST00000527149 SNAPC4Q5SXM2 1469 aa28.32■■■□□ 2.12
SMCO4-204ENST00000527149 CHIC1Q5VXU3 224 aa28.3■■■□□ 2.12
SMCO4-204ENST00000527149 MAGI1Q96QZ7 1491 aaPredicted RBP28.29■■■□□ 2.12
SMCO4-204ENST00000527149 ERICH3Q5RHP9 1530 aa28.28■■■□□ 2.12
SMCO4-204ENST00000527149 KIF27Q86VH2 1401 aa28.27■■■□□ 2.12
SMCO4-204ENST00000527149 ADAMTS12P58397 1594 aa28.23■■■□□ 2.11
SMCO4-204ENST00000527149 CHD1O14646 1710 aa28.21■■■□□ 2.11
SMCO4-204ENST00000527149 RUSC2Q8N2Y8 1516 aa28.18■■■□□ 2.1
SMCO4-204ENST00000527149 SYNJ2O15056 1496 aa28.17■■■□□ 2.1
SMCO4-204ENST00000527149 IGF1RP08069 1367 aa28.14■■■□□ 2.1
SMCO4-204ENST00000527149 FHAD1B1AJZ9 1412 aa28.11■■■□□ 2.09
SMCO4-204ENST00000527149 CUL7Q14999 1698 aa28.09■■■□□ 2.09
SMCO4-204ENST00000527149 GRIN2AQ12879 1464 aa28.05■■■□□ 2.08
SMCO4-204ENST00000527149 FBLN2P98095 1184 aa27.99■■■□□ 2.07
SMCO4-204ENST00000527149 CHMP7Q8WUX9 453 aaPredicted RBP27.99■■■□□ 2.07
SMCO4-204ENST00000527149 EEA1Q15075 1411 aa27.96■■■□□ 2.07
SMCO4-204ENST00000527149 OSCARQ8IYS5 282 aa27.96■■■□□ 2.07
SMCO4-204ENST00000527149 CARMIL1Q5VZK9 1371 aa27.95■■■□□ 2.06
SMCO4-204ENST00000527149 NUP160Q12769 1436 aa27.94■■■□□ 2.06
SMCO4-204ENST00000527149 CLASP1Q7Z460 1538 aa27.93■■■□□ 2.06
SMCO4-204ENST00000527149 CEP170Q5SW79 1584 aa27.93■■■□□ 2.06
SMCO4-204ENST00000527149 PRXQ9BXM0 1461 aa27.9■■■□□ 2.06
SMCO4-204ENST00000527149 DNAJC5Q9H3Z4 198 aa27.88■■■□□ 2.05
SMCO4-204ENST00000527149 RAPGEF2Q9Y4G8 1499 aa27.85■■■□□ 2.05
SMCO4-204ENST00000527149 CSRNP3Q8WYN3 585 aa27.81■■■□□ 2.04
SMCO4-204ENST00000527149 FAM9AQ8IZU1 332 aaPredicted RBP27.74■■■□□ 2.03
SMCO4-204ENST00000527149 KIF21BO75037 1637 aa27.72■■■□□ 2.03
SMCO4-204ENST00000527149 SHROOM2Q13796 1616 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms