Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB2O43679 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB2O43679 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDB2O43679 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LDB2O43679 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB2O43679 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LDB2O43679 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 SOCS2P1-201ENST00000417727 557 ntBASIC15.29■□□□□ 0.04
LDB2O43679 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 NUS1P3-201ENST00000423502 862 ntBASIC15.29■□□□□ 0.04
LDB2O43679 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LDB2O43679 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB2O43679 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 AC133539.2-201ENST00000604757 467 ntBASIC15.29■□□□□ 0.04
LDB2O43679 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB2O43679 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB2O43679 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB2O43679 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LDB2O43679 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.28■□□□□ 0.04
LDB2O43679 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 AC005034.1-201ENST00000426657 489 ntBASIC15.28■□□□□ 0.04
LDB2O43679 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.04
LDB2O43679 AP001582.1-201ENST00000525856 295 ntBASIC15.28■□□□□ 0.04
LDB2O43679 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.28■□□□□ 0.04
LDB2O43679 TP53TG3HP-202ENST00000569755 579 ntBASIC15.28■□□□□ 0.04
LDB2O43679 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.28■□□□□ 0.04
LDB2O43679 WFDC1-204ENST00000613603 549 ntBASIC15.28■□□□□ 0.04
LDB2O43679 AC005252.2-201ENST00000624630 1141 ntBASIC15.28■□□□□ 0.04
LDB2O43679 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms