RNA–Protein interactions for RNA: ENST00000295006.5

CAPN2-201, Transcript of calpain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN2, Length 3,573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN2-201ENST00000295006 NISCHQ9Y2I1 1504 aa29.69■■■□□ 2.34
CAPN2-201ENST00000295006 SHROOM4Q9ULL8 1493 aa27.07■■□□□ 1.92
CAPN2-201ENST00000295006 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
CAPN2-201ENST00000295006 DCAF8L2P0C7V8 631 aa26.84■■□□□ 1.89
CAPN2-201ENST00000295006 PCGF6Q9BYE7 350 aa25.52■■□□□ 1.68
CAPN2-201ENST00000295006 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
CAPN2-201ENST00000295006 EHMT2Q96KQ7 1210 aa25.36■■□□□ 1.65
CAPN2-201ENST00000295006 LOC105371045A0A1W2PR82 267 aa25.16■■□□□ 1.62
CAPN2-201ENST00000295006 FAM9AQ8IZU1 332 aaPredicted RBP25.06■■□□□ 1.6
CAPN2-201ENST00000295006 HRCP23327 699 aa25.01■■□□□ 1.59
CAPN2-201ENST00000295006 PPARGC1BQ86YN6 1023 aaKnown RBP25■■□□□ 1.59
CAPN2-201ENST00000295006 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
CAPN2-201ENST00000295006 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
CAPN2-201ENST00000295006 TRIM41Q8WV44 630 aa24.67■■□□□ 1.54
CAPN2-201ENST00000295006 TTBK1Q5TCY1 1321 aaPredicted RBP24.5■■□□□ 1.51
CAPN2-201ENST00000295006 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
CAPN2-201ENST00000295006 TRIM26Q12899 539 aaPredicted RBP24.44■■□□□ 1.5
CAPN2-201ENST00000295006 SCRIBQ14160 1630 aa24.03■■□□□ 1.44
CAPN2-201ENST00000295006 ABCC9O60706 1549 aa24.02■■□□□ 1.44
CAPN2-201ENST00000295006 DCAF1Q9Y4B6 1507 aa23.99■■□□□ 1.43
CAPN2-201ENST00000295006 CCER1Q8TC90 406 aaPredicted RBP23.98■■□□□ 1.43
CAPN2-201ENST00000295006 ZEB1P37275 1124 aaPredicted RBP23.97■■□□□ 1.43
CAPN2-201ENST00000295006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.91■■□□□ 1.42
CAPN2-201ENST00000295006 RANGAP1P46060 587 aaPredicted RBP23.87■■□□□ 1.41
CAPN2-201ENST00000295006 RSF1Q96T23 1441 aaPredicted RBP23.85■■□□□ 1.41
CAPN2-201ENST00000295006 UBTFP17480 764 aaKnown RBP23.77■■□□□ 1.4
CAPN2-201ENST00000295006 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
CAPN2-201ENST00000295006 RB1CC1Q8TDY2 1594 aa23.55■■□□□ 1.36
CAPN2-201ENST00000295006 PABPN1Q86U42 306 aaKnown RBP eCLIP23.53■■□□□ 1.36
CAPN2-201ENST00000295006 YTHDC1Q96MU7 727 aaKnown RBP23.48■■□□□ 1.35
CAPN2-201ENST00000295006 HNRNPUL2Q1KMD3 747 aaKnown RBP23.44■■□□□ 1.34
CAPN2-201ENST00000295006 APLP2Q06481 763 aa23.41■■□□□ 1.34
CAPN2-201ENST00000295006 DIEXFQ68CQ4 756 aaKnown RBP23.34■■□□□ 1.33
CAPN2-201ENST00000295006 SCAF1Q9H7N4 1312 aaKnown RBP23.31■■□□□ 1.32
CAPN2-201ENST00000295006 MROH2BQ7Z745 1585 aa23.3■■□□□ 1.32
CAPN2-201ENST00000295006 CENPBP07199 599 aaPredicted RBP23.26■■□□□ 1.31
CAPN2-201ENST00000295006 CSRNP3Q8WYN3 585 aa23.17■■□□□ 1.3
CAPN2-201ENST00000295006 WIZO95785 1651 aa23.13■■□□□ 1.29
CAPN2-201ENST00000295006 GTF3C3Q9Y5Q9 886 aa23.12■■□□□ 1.29
CAPN2-201ENST00000295006 NEUROD1Q13562 356 aa23.12■■□□□ 1.29
CAPN2-201ENST00000295006 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
CAPN2-201ENST00000295006 ITGAEP38570 1179 aa23.03■■□□□ 1.28
CAPN2-201ENST00000295006 ABCC8Q09428 1581 aa23.02■■□□□ 1.28
CAPN2-201ENST00000295006 NACADO15069 1562 aa23■■□□□ 1.27
CAPN2-201ENST00000295006 PELP1Q8IZL8 1130 aaKnown RBP23■■□□□ 1.27
CAPN2-201ENST00000295006 SOGA1O94964 1423 aa22.99■■□□□ 1.27
CAPN2-201ENST00000295006 CCDC88BA6NC98 1476 aa22.96■■□□□ 1.27
CAPN2-201ENST00000295006 CEP162Q5TB80 1403 aa22.95■■□□□ 1.26
CAPN2-201ENST00000295006 ATP1B4Q9UN42 357 aaPredicted RBP22.91■■□□□ 1.26
CAPN2-201ENST00000295006 ZNF316A6NFI3 1004 aaPredicted RBP22.91■■□□□ 1.26
CAPN2-201ENST00000295006 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
CAPN2-201ENST00000295006 RUSC2Q8N2Y8 1516 aa22.79■■□□□ 1.24
CAPN2-201ENST00000295006 MIER1Q8N108 512 aa22.73■■□□□ 1.23
CAPN2-201ENST00000295006 TNIKQ9UKE5 1360 aa22.7■■□□□ 1.22
CAPN2-201ENST00000295006 WRNQ14191 1432 aaPredicted RBP eCLIP22.64■■□□□ 1.21
CAPN2-201ENST00000295006 CLIP1P30622 1438 aa22.61■■□□□ 1.21
CAPN2-201ENST00000295006 GOLGA3Q08378 1498 aa22.58■■□□□ 1.2
CAPN2-201ENST00000295006 TOP2AP11388 1531 aaKnown RBP22.53■■□□□ 1.2
CAPN2-201ENST00000295006 P3H3Q8IVL6 736 aa22.5■■□□□ 1.19
CAPN2-201ENST00000295006 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
CAPN2-201ENST00000295006 EEA1Q15075 1411 aa22.46■■□□□ 1.19
CAPN2-201ENST00000295006 FAM50AQ14320 339 aaKnown RBP22.44■■□□□ 1.18
CAPN2-201ENST00000295006 SMARCA2P51531 1590 aa22.44■■□□□ 1.18
CAPN2-201ENST00000295006 CEP164Q9UPV0 1460 aa22.37■■□□□ 1.17
CAPN2-201ENST00000295006 KANK4Q5T7N3 995 aaPredicted RBP22.35■■□□□ 1.17
CAPN2-201ENST00000295006 BCANQ96GW7 911 aa22.33■■□□□ 1.17
CAPN2-201ENST00000295006 BAZ1BQ9UIG0 1483 aaKnown RBP22.32■■□□□ 1.16
CAPN2-201ENST00000295006 RAPGEF2Q9Y4G8 1499 aa22.29■■□□□ 1.16
CAPN2-201ENST00000295006 HIRIP3Q9BW71 556 aaPredicted RBP22.28■■□□□ 1.16
CAPN2-201ENST00000295006 VPS8Q8N3P4 1428 aa22.24■■□□□ 1.15
CAPN2-201ENST00000295006 DDX10Q13206 875 aaKnown RBP22.16■■□□□ 1.14
CAPN2-201ENST00000295006 CNGB1Q14028 1251 aaPredicted RBP22.11■■□□□ 1.13
CAPN2-201ENST00000295006 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
CAPN2-201ENST00000295006 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
CAPN2-201ENST00000295006 SIN3AQ96ST3 1273 aa22.08■■□□□ 1.13
CAPN2-201ENST00000295006 EIF4G1Q04637 1599 aaKnown RBP22.07■■□□□ 1.12
CAPN2-201ENST00000295006 ARID3CA6NKF2 412 aa22.06■■□□□ 1.12
CAPN2-201ENST00000295006 NEFLP07196 543 aa22.03■■□□□ 1.12
CAPN2-201ENST00000295006 KCNH8Q96L42 1107 aa22.01■■□□□ 1.11
CAPN2-201ENST00000295006 TRIM52Q96A61 297 aa21.98■■□□□ 1.11
CAPN2-201ENST00000295006 KIF27Q86VH2 1401 aa21.98■■□□□ 1.11
CAPN2-201ENST00000295006 DHX57Q6P158 1386 aaKnown RBP21.97■■□□□ 1.11
CAPN2-201ENST00000295006 CCNB3Q8WWL7 1395 aa21.94■■□□□ 1.1
CAPN2-201ENST00000295006 FKBP8Q14318 412 aa21.93■■□□□ 1.1
CAPN2-201ENST00000295006 KIF21BO75037 1637 aa21.92■■□□□ 1.1
CAPN2-201ENST00000295006 UNC13AQ9UPW8 1703 aa21.91■■□□□ 1.1
CAPN2-201ENST00000295006 SUPT16HQ9Y5B9 1047 aaKnown RBP21.91■■□□□ 1.1
CAPN2-201ENST00000295006 POLR3GLQ9BT43 218 aa21.88■■□□□ 1.09
CAPN2-201ENST00000295006 ANP32CO43423 234 aa21.86■■□□□ 1.09
CAPN2-201ENST00000295006 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
CAPN2-201ENST00000295006 CUX2O14529 1486 aa21.85■■□□□ 1.09
CAPN2-201ENST00000295006 CHIC2Q9UKJ5 165 aa21.84■■□□□ 1.09
CAPN2-201ENST00000295006 MYT1Q01538 1121 aa21.83■■□□□ 1.09
CAPN2-201ENST00000295006 RAB3GAP2Q9H2M9 1393 aa21.82■■□□□ 1.08
CAPN2-201ENST00000295006 CLSPNQ9HAW4 1339 aa21.8■■□□□ 1.08
CAPN2-201ENST00000295006 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
CAPN2-201ENST00000295006 CARMIL1Q5VZK9 1371 aa21.77■■□□□ 1.08
CAPN2-201ENST00000295006 IRX6P78412 446 aaPredicted RBP21.73■■□□□ 1.07
CAPN2-201ENST00000295006 TONSLQ96HA7 1378 aa21.72■■□□□ 1.07
CAPN2-201ENST00000295006 RRP7BPQ9NSQ0 103 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms