Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
UPK3AO75631 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK3AO75631 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
UPK3AO75631 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.72■□□□□ 0.91
UPK3AO75631 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.72■□□□□ 0.91
UPK3AO75631 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.71■□□□□ 0.91
UPK3AO75631 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.71■□□□□ 0.91
UPK3AO75631 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.71■□□□□ 0.91
UPK3AO75631 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
UPK3AO75631 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.71■□□□□ 0.91
UPK3AO75631 RARRES2P1-201ENST00000474487 481 ntBASIC20.71■□□□□ 0.91
UPK3AO75631 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.71■□□□□ 0.91
UPK3AO75631 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.71■□□□□ 0.91
UPK3AO75631 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPK3AO75631 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
UPK3AO75631 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UPK3AO75631 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPK3AO75631 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
UPK3AO75631 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
UPK3AO75631 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.7■□□□□ 0.9
UPK3AO75631 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.7■□□□□ 0.9
UPK3AO75631 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.7■□□□□ 0.9
UPK3AO75631 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.7■□□□□ 0.9
UPK3AO75631 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPK3AO75631 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPK3AO75631 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPK3AO75631 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPK3AO75631 AC090877.2-201ENST00000558441 1738 ntBASIC20.69■□□□□ 0.9
UPK3AO75631 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.69■□□□□ 0.9
UPK3AO75631 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPK3AO75631 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPK3AO75631 AC004812.2-201ENST00000611079 2094 ntBASIC20.68■□□□□ 0.9
UPK3AO75631 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
UPK3AO75631 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.68■□□□□ 0.9
UPK3AO75631 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UPK3AO75631 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPK3AO75631 AC120024.1-201ENST00000562672 995 ntBASIC20.68■□□□□ 0.9
UPK3AO75631 AC103724.3-201ENST00000564481 992 ntBASIC20.68■□□□□ 0.9
UPK3AO75631 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPK3AO75631 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
UPK3AO75631 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.67■□□□□ 0.9
UPK3AO75631 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.67■□□□□ 0.9
UPK3AO75631 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPK3AO75631 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
UPK3AO75631 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPK3AO75631 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPK3AO75631 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPK3AO75631 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.66■□□□□ 0.9
UPK3AO75631 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
UPK3AO75631 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.66■□□□□ 0.9
UPK3AO75631 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPK3AO75631 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPK3AO75631 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPK3AO75631 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.65■□□□□ 0.9
UPK3AO75631 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.65■□□□□ 0.9
UPK3AO75631 KRT18P24-201ENST00000344739 1156 ntBASIC20.65■□□□□ 0.9
UPK3AO75631 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UPK3AO75631 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.65■□□□□ 0.9
UPK3AO75631 THA1P-201ENST00000590384 1145 ntBASIC20.65■□□□□ 0.9
UPK3AO75631 AC011551.1-201ENST00000614101 683 ntBASIC20.65■□□□□ 0.9
UPK3AO75631 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.65■□□□□ 0.9
UPK3AO75631 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UPK3AO75631 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.65■□□□□ 0.9
UPK3AO75631 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.64■□□□□ 0.9
UPK3AO75631 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
UPK3AO75631 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK3AO75631 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK3AO75631 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
UPK3AO75631 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
UPK3AO75631 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.63■□□□□ 0.89
UPK3AO75631 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK3AO75631 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
UPK3AO75631 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.62■□□□□ 0.89
UPK3AO75631 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.62■□□□□ 0.89
UPK3AO75631 AC133561.1-201ENST00000568600 2415 ntBASIC20.62■□□□□ 0.89
UPK3AO75631 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.62■□□□□ 0.89
UPK3AO75631 AL031848.2-201ENST00000607670 837 ntBASIC20.62■□□□□ 0.89
UPK3AO75631 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
UPK3AO75631 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK3AO75631 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK3AO75631 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK3AO75631 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UPK3AO75631 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK3AO75631 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
UPK3AO75631 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UPK3AO75631 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UPK3AO75631 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
UPK3AO75631 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK3AO75631 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms