Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 AL035685.1-201ENST00000636663 812 ntBASIC20.79■□□□□ 0.92
SSX4O60224 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX4O60224 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.78■□□□□ 0.92
SSX4O60224 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.78■□□□□ 0.92
SSX4O60224 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.78■□□□□ 0.92
SSX4O60224 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.78■□□□□ 0.92
SSX4O60224 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.78■□□□□ 0.92
SSX4O60224 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX4O60224 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SSX4O60224 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX4O60224 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX4O60224 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.77■□□□□ 0.92
SSX4O60224 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX4O60224 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX4O60224 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SSX4O60224 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
SSX4O60224 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.76■□□□□ 0.91
SSX4O60224 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SSX4O60224 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX4O60224 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX4O60224 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.75■□□□□ 0.91
SSX4O60224 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX4O60224 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX4O60224 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX4O60224 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SSX4O60224 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX4O60224 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX4O60224 YBX1P4-201ENST00000392794 808 ntBASIC20.75■□□□□ 0.91
SSX4O60224 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX4O60224 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SSX4O60224 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX4O60224 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.74■□□□□ 0.91
SSX4O60224 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.74■□□□□ 0.91
SSX4O60224 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SSX4O60224 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.74■□□□□ 0.91
SSX4O60224 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SSX4O60224 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX4O60224 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX4O60224 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.73■□□□□ 0.91
SSX4O60224 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX4O60224 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.73■□□□□ 0.91
SSX4O60224 LINC00565-201ENST00000562710 2331 ntBASIC20.73■□□□□ 0.91
SSX4O60224 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SSX4O60224 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.73■□□□□ 0.91
SSX4O60224 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX4O60224 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SSX4O60224 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.72■□□□□ 0.91
SSX4O60224 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SSX4O60224 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX4O60224 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.72■□□□□ 0.91
SSX4O60224 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX4O60224 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.71■□□□□ 0.91
SSX4O60224 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX4O60224 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.71■□□□□ 0.91
SSX4O60224 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.71■□□□□ 0.91
SSX4O60224 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.71■□□□□ 0.91
SSX4O60224 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX4O60224 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX4O60224 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX4O60224 AL117328.2-201ENST00000624617 1940 ntBASIC20.7■□□□□ 0.91
SSX4O60224 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SSX4O60224 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.7■□□□□ 0.9
SSX4O60224 EP400NL-214ENST00000641289 2402 ntBASIC20.7■□□□□ 0.9
SSX4O60224 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SSX4O60224 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX4O60224 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
SSX4O60224 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX4O60224 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX4O60224 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SSX4O60224 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX4O60224 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX4O60224 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.69■□□□□ 0.9
SSX4O60224 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SSX4O60224 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms