RNA–Protein interactions for RNA: ENST00000351817.4

NKX2-4-201, Transcript of NK2 homeobox 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NKX2-4, Length 2,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4-201ENST00000351817 NISCHQ9Y2I1 1504 aa46.29■■■■■ 5
NKX2-4-201ENST00000351817 CCDC180Q9P1Z9 1646 aa39.9■■■■□ 3.98
NKX2-4-201ENST00000351817 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
NKX2-4-201ENST00000351817 SHROOM4Q9ULL8 1493 aa38.78■■■■□ 3.8
NKX2-4-201ENST00000351817 DCAF1Q9Y4B6 1507 aa38.15■■■■□ 3.7
NKX2-4-201ENST00000351817 DCAF8L2P0C7V8 631 aa38.15■■■■□ 3.7
NKX2-4-201ENST00000351817 SUPT5HO00267 1087 aaKnown RBP38.04■■■■□ 3.68
NKX2-4-201ENST00000351817 MYO15BQ96JP2 1530 aa37.39■■■■□ 3.58
NKX2-4-201ENST00000351817 ABCC9O60706 1549 aa37.3■■■■□ 3.56
NKX2-4-201ENST00000351817 CHIC1Q5VXU3 224 aa37.1■■■■□ 3.53
NKX2-4-201ENST00000351817 NACADO15069 1562 aa37.01■■■■□ 3.52
NKX2-4-201ENST00000351817 SCRIBQ14160 1630 aa36.99■■■■□ 3.51
NKX2-4-201ENST00000351817 RB1CC1Q8TDY2 1594 aa36.54■■■■□ 3.44
NKX2-4-201ENST00000351817 RSF1Q96T23 1441 aaPredicted RBP36.24■■■■□ 3.39
NKX2-4-201ENST00000351817 CECR2Q9BXF3 1484 aa36.04■■■■□ 3.36
NKX2-4-201ENST00000351817 UNC13AQ9UPW8 1703 aa35.98■■■■□ 3.35
NKX2-4-201ENST00000351817 HRCP23327 699 aa35.93■■■■□ 3.34
NKX2-4-201ENST00000351817 MROH2BQ7Z745 1585 aa35.87■■■■□ 3.33
NKX2-4-201ENST00000351817 LOC105371045A0A1W2PR82 267 aa35.87■■■■□ 3.33
NKX2-4-201ENST00000351817 PCGF6Q9BYE7 350 aa35.82■■■■□ 3.32
NKX2-4-201ENST00000351817 WIZO95785 1651 aa35.63■■■■□ 3.29
NKX2-4-201ENST00000351817 BAZ1AQ9NRL2 1556 aaPredicted RBP35.63■■■■□ 3.29
NKX2-4-201ENST00000351817 BICRAQ9NZM4 1560 aa35.56■■■■□ 3.28
NKX2-4-201ENST00000351817 TRIM41Q8WV44 630 aa35.55■■■■□ 3.28
NKX2-4-201ENST00000351817 SMARCA4P51532 1647 aa35.43■■■■□ 3.26
NKX2-4-201ENST00000351817 PABPN1Q86U42 306 aaKnown RBP eCLIP35.4■■■■□ 3.26
NKX2-4-201ENST00000351817 TRIM26Q12899 539 aaPredicted RBP35.31■■■■□ 3.24
NKX2-4-201ENST00000351817 TOP2AP11388 1531 aaKnown RBP35.16■■■■□ 3.22
NKX2-4-201ENST00000351817 FAM9AQ8IZU1 332 aaPredicted RBP35.1■■■■□ 3.21
NKX2-4-201ENST00000351817 EIF4G1Q04637 1599 aaKnown RBP35■■■■□ 3.19
NKX2-4-201ENST00000351817 PPARGC1BQ86YN6 1023 aaKnown RBP34.98■■■■□ 3.19
NKX2-4-201ENST00000351817 SMARCA2P51531 1590 aa34.91■■■■□ 3.18
NKX2-4-201ENST00000351817 PEG3Q9GZU2 1588 aa34.91■■■■□ 3.18
NKX2-4-201ENST00000351817 CCDC88BA6NC98 1476 aa34.9■■■■□ 3.18
NKX2-4-201ENST00000351817 ATAD2BQ9ULI0 1458 aa34.68■■■■□ 3.14
NKX2-4-201ENST00000351817 EHMT2Q96KQ7 1210 aa34.67■■■■□ 3.14
NKX2-4-201ENST00000351817 ZEB1P37275 1124 aaPredicted RBP34.62■■■■□ 3.13
NKX2-4-201ENST00000351817 ABCC8Q09428 1581 aa34.54■■■■□ 3.12
NKX2-4-201ENST00000351817 BAZ1BQ9UIG0 1483 aaKnown RBP34.5■■■■□ 3.11
NKX2-4-201ENST00000351817 EEA1Q15075 1411 aa34.24■■■■□ 3.07
NKX2-4-201ENST00000351817 NCAPD3P42695 1498 aa34.2■■■■□ 3.07
NKX2-4-201ENST00000351817 SOGA1O94964 1423 aa34.19■■■■□ 3.06
NKX2-4-201ENST00000351817 HMGXB3Q12766 1538 aa34.18■■■■□ 3.06
NKX2-4-201ENST00000351817 WRNQ14191 1432 aaPredicted RBP eCLIP34.15■■■■□ 3.06
NKX2-4-201ENST00000351817 TNIKQ9UKE5 1360 aa34.11■■■■□ 3.05
NKX2-4-201ENST00000351817 CEP162Q5TB80 1403 aa34.09■■■■□ 3.05
NKX2-4-201ENST00000351817 CSRNP3Q8WYN3 585 aa34.06■■■■□ 3.04
NKX2-4-201ENST00000351817 RUSC2Q8N2Y8 1516 aa34■■■■□ 3.03
NKX2-4-201ENST00000351817 SYNJ1O43426 1573 aa33.95■■■■□ 3.02
NKX2-4-201ENST00000351817 GOLGA3Q08378 1498 aa33.92■■■■□ 3.02
NKX2-4-201ENST00000351817 UBTFP17480 764 aaKnown RBP33.84■■■■□ 3.01
NKX2-4-201ENST00000351817 KIF21BO75037 1637 aa33.76■■■□□ 2.99
NKX2-4-201ENST00000351817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.75■■■□□ 2.99
NKX2-4-201ENST00000351817 CEP164Q9UPV0 1460 aa33.75■■■□□ 2.99
NKX2-4-201ENST00000351817 CCER1Q8TC90 406 aaPredicted RBP33.73■■■□□ 2.99
NKX2-4-201ENST00000351817 CC2D2AQ9P2K1 1620 aa33.72■■■□□ 2.99
NKX2-4-201ENST00000351817 CFTRP13569 1480 aa33.68■■■□□ 2.98
NKX2-4-201ENST00000351817 TOP2BQ02880 1626 aa33.67■■■□□ 2.98
NKX2-4-201ENST00000351817 BIVM-ERCC5R4GMW8 1640 aa33.61■■■□□ 2.97
NKX2-4-201ENST00000351817 TTBK1Q5TCY1 1321 aaPredicted RBP33.59■■■□□ 2.97
NKX2-4-201ENST00000351817 PRDM2Q13029 1718 aa33.49■■■□□ 2.95
NKX2-4-201ENST00000351817 CLIP1P30622 1438 aa33.48■■■□□ 2.95
NKX2-4-201ENST00000351817 CUX1P39880 1505 aa33.47■■■□□ 2.95
NKX2-4-201ENST00000351817 CADPSQ9ULU8 1353 aa33.41■■■□□ 2.94
NKX2-4-201ENST00000351817 RAPGEF2Q9Y4G8 1499 aa33.4■■■□□ 2.94
NKX2-4-201ENST00000351817 VPS8Q8N3P4 1428 aa33.37■■■□□ 2.93
NKX2-4-201ENST00000351817 ERICH3Q5RHP9 1530 aa33.23■■■□□ 2.91
NKX2-4-201ENST00000351817 PRXQ9BXM0 1461 aa33.16■■■□□ 2.9
NKX2-4-201ENST00000351817 APLP2Q06481 763 aa33.16■■■□□ 2.9
NKX2-4-201ENST00000351817 KIF27Q86VH2 1401 aa33.08■■■□□ 2.89
NKX2-4-201ENST00000351817 FANCD2Q9BXW9 1451 aa33.07■■■□□ 2.88
NKX2-4-201ENST00000351817 DIEXFQ68CQ4 756 aaKnown RBP33.06■■■□□ 2.88
NKX2-4-201ENST00000351817 NESP48681 1621 aa33.02■■■□□ 2.88
NKX2-4-201ENST00000351817 HNRNPUL2Q1KMD3 747 aaKnown RBP33.02■■■□□ 2.88
NKX2-4-201ENST00000351817 RANGAP1P46060 587 aaPredicted RBP33■■■□□ 2.87
NKX2-4-201ENST00000351817 SCAF1Q9H7N4 1312 aaKnown RBP32.98■■■□□ 2.87
NKX2-4-201ENST00000351817 FGD5Q6ZNL6 1462 aa32.97■■■□□ 2.87
NKX2-4-201ENST00000351817 ARAP1Q96P48 1450 aa32.95■■■□□ 2.87
NKX2-4-201ENST00000351817 CUX2O14529 1486 aa32.9■■■□□ 2.86
NKX2-4-201ENST00000351817 ZNF316A6NFI3 1004 aaPredicted RBP32.89■■■□□ 2.86
NKX2-4-201ENST00000351817 DNAJC5BQ9UF47 199 aa32.89■■■□□ 2.86
NKX2-4-201ENST00000351817 LAMC3Q9Y6N6 1575 aa32.89■■■□□ 2.86
NKX2-4-201ENST00000351817 DNMBPQ6XZF7 1577 aa32.86■■■□□ 2.85
NKX2-4-201ENST00000351817 TOPBP1Q92547 1522 aa32.8■■■□□ 2.84
NKX2-4-201ENST00000351817 IGF1RP08069 1367 aa32.79■■■□□ 2.84
NKX2-4-201ENST00000351817 ACIN1Q9UKV3 1341 aaKnown RBP32.79■■■□□ 2.84
NKX2-4-201ENST00000351817 POLA1P09884 1462 aaPredicted RBP32.71■■■□□ 2.83
NKX2-4-201ENST00000351817 CENPBP07199 599 aaPredicted RBP32.68■■■□□ 2.82
NKX2-4-201ENST00000351817 RAD54L2Q9Y4B4 1467 aa32.68■■■□□ 2.82
NKX2-4-201ENST00000351817 ARHGAP35Q9NRY4 1499 aa32.67■■■□□ 2.82
NKX2-4-201ENST00000351817 NEUROD1Q13562 356 aa32.66■■■□□ 2.82
NKX2-4-201ENST00000351817 URB2Q14146 1524 aaKnown RBP32.66■■■□□ 2.82
NKX2-4-201ENST00000351817 KANK4Q5T7N3 995 aaPredicted RBP32.65■■■□□ 2.82
NKX2-4-201ENST00000351817 ABCA10Q8WWZ4 1543 aa32.65■■■□□ 2.82
NKX2-4-201ENST00000351817 PDS5BQ9NTI5 1447 aa32.62■■■□□ 2.81
NKX2-4-201ENST00000351817 CLSPNQ9HAW4 1339 aa32.61■■■□□ 2.81
NKX2-4-201ENST00000351817 CARMIL1Q5VZK9 1371 aa32.61■■■□□ 2.81
NKX2-4-201ENST00000351817 RRBP1Q9P2E9 1410 aaKnown RBP32.61■■■□□ 2.81
NKX2-4-201ENST00000351817 KIF21AQ7Z4S6 1674 aa32.56■■■□□ 2.8
NKX2-4-201ENST00000351817 DHX57Q6P158 1386 aaKnown RBP32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms