RNA–Protein interactions for RNA: ENST00000551492.5

NPAS3-210, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NPAS3, Length 2,817 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-210ENST00000551492 NISCHQ9Y2I1 1504 aa45.13■■■■■ 4.82
NPAS3-210ENST00000551492 CCDC180Q9P1Z9 1646 aa38.81■■■■□ 3.8
NPAS3-210ENST00000551492 DCAF8L2P0C7V8 631 aa38.73■■■■□ 3.79
NPAS3-210ENST00000551492 ABCC9O60706 1549 aa38.06■■■■□ 3.68
NPAS3-210ENST00000551492 SHROOM4Q9ULL8 1493 aa37.99■■■■□ 3.67
NPAS3-210ENST00000551492 ZCCHC6Q5VYS8 1495 aaKnown RBP37.76■■■■□ 3.64
NPAS3-210ENST00000551492 DCAF1Q9Y4B6 1507 aa36.68■■■■□ 3.46
NPAS3-210ENST00000551492 SCRIBQ14160 1630 aa36.63■■■■□ 3.45
NPAS3-210ENST00000551492 SUPT5HO00267 1087 aaKnown RBP36.47■■■■□ 3.43
NPAS3-210ENST00000551492 NACADO15069 1562 aa36.39■■■■□ 3.42
NPAS3-210ENST00000551492 PABPN1Q86U42 306 aaKnown RBP eCLIP36.27■■■■□ 3.4
NPAS3-210ENST00000551492 RB1CC1Q8TDY2 1594 aa36.25■■■■□ 3.39
NPAS3-210ENST00000551492 MYO15BQ96JP2 1530 aa36.16■■■■□ 3.38
NPAS3-210ENST00000551492 PELP1Q8IZL8 1130 aaKnown RBP35.99■■■■□ 3.35
NPAS3-210ENST00000551492 UNC13AQ9UPW8 1703 aa35.74■■■■□ 3.31
NPAS3-210ENST00000551492 CECR2Q9BXF3 1484 aa35.61■■■■□ 3.29
NPAS3-210ENST00000551492 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
NPAS3-210ENST00000551492 RSF1Q96T23 1441 aaPredicted RBP35.21■■■■□ 3.23
NPAS3-210ENST00000551492 MROH2BQ7Z745 1585 aa35.18■■■■□ 3.22
NPAS3-210ENST00000551492 MYT1Q01538 1121 aa34.96■■■■□ 3.19
NPAS3-210ENST00000551492 HRCP23327 699 aa34.94■■■■□ 3.18
NPAS3-210ENST00000551492 WIZO95785 1651 aa34.91■■■■□ 3.18
NPAS3-210ENST00000551492 BAZ1AQ9NRL2 1556 aaPredicted RBP34.71■■■■□ 3.15
NPAS3-210ENST00000551492 SMARCA4P51532 1647 aa34.69■■■■□ 3.14
NPAS3-210ENST00000551492 PPARGC1BQ86YN6 1023 aaKnown RBP34.59■■■■□ 3.13
NPAS3-210ENST00000551492 EIF4G1Q04637 1599 aaKnown RBP34.37■■■■□ 3.09
NPAS3-210ENST00000551492 CHIC1Q5VXU3 224 aa34.36■■■■□ 3.09
NPAS3-210ENST00000551492 ATAD2BQ9ULI0 1458 aa34.28■■■■□ 3.08
NPAS3-210ENST00000551492 SCAF1Q9H7N4 1312 aaKnown RBP34.25■■■■□ 3.07
NPAS3-210ENST00000551492 DNAJC5BQ9UF47 199 aa34.24■■■■□ 3.07
NPAS3-210ENST00000551492 CCDC88BA6NC98 1476 aa34.14■■■■□ 3.06
NPAS3-210ENST00000551492 BAZ1BQ9UIG0 1483 aaKnown RBP34.12■■■■□ 3.05
NPAS3-210ENST00000551492 TOP2AP11388 1531 aaKnown RBP34.09■■■■□ 3.05
NPAS3-210ENST00000551492 CC2D2AQ9P2K1 1620 aa34.01■■■■□ 3.04
NPAS3-210ENST00000551492 SMARCA2P51531 1590 aa33.95■■■■□ 3.03
NPAS3-210ENST00000551492 EHMT2Q96KQ7 1210 aa33.94■■■■□ 3.02
NPAS3-210ENST00000551492 FAM9AQ8IZU1 332 aaPredicted RBP33.89■■■■□ 3.02
NPAS3-210ENST00000551492 PEG3Q9GZU2 1588 aa33.87■■■■□ 3.01
NPAS3-210ENST00000551492 TRIM41Q8WV44 630 aa33.85■■■■□ 3.01
NPAS3-210ENST00000551492 NCAPD3P42695 1498 aa33.79■■■■□ 3
NPAS3-210ENST00000551492 ABCC8Q09428 1581 aa33.67■■■□□ 2.98
NPAS3-210ENST00000551492 PCGF6Q9BYE7 350 aa33.61■■■□□ 2.97
NPAS3-210ENST00000551492 LOC105371045A0A1W2PR82 267 aa33.6■■■□□ 2.97
NPAS3-210ENST00000551492 HMGXB3Q12766 1538 aa33.51■■■□□ 2.96
NPAS3-210ENST00000551492 NESP48681 1621 aa33.39■■■□□ 2.94
NPAS3-210ENST00000551492 TTBK1Q5TCY1 1321 aaPredicted RBP33.26■■■□□ 2.91
NPAS3-210ENST00000551492 PRKCSHP14314 528 aaPredicted RBP33.24■■■□□ 2.91
NPAS3-210ENST00000551492 CADPSQ9ULU8 1353 aa33.17■■■□□ 2.9
NPAS3-210ENST00000551492 WRNQ14191 1432 aaPredicted RBP eCLIP33.13■■■□□ 2.89
NPAS3-210ENST00000551492 CFTRP13569 1480 aa33.1■■■□□ 2.89
NPAS3-210ENST00000551492 BCL11AQ9H165 835 aa33.1■■■□□ 2.89
NPAS3-210ENST00000551492 SOGA1O94964 1423 aa33.04■■■□□ 2.88
NPAS3-210ENST00000551492 RUSC2Q8N2Y8 1516 aa33.04■■■□□ 2.88
NPAS3-210ENST00000551492 SYNJ1O43426 1573 aa33.02■■■□□ 2.88
NPAS3-210ENST00000551492 FANCD2Q9BXW9 1451 aa32.86■■■□□ 2.85
NPAS3-210ENST00000551492 RANGAP1P46060 587 aaPredicted RBP32.81■■■□□ 2.84
NPAS3-210ENST00000551492 CUX1P39880 1505 aa32.8■■■□□ 2.84
NPAS3-210ENST00000551492 NEUROD1Q13562 356 aa32.68■■■□□ 2.82
NPAS3-210ENST00000551492 ACIN1Q9UKV3 1341 aaKnown RBP32.67■■■□□ 2.82
NPAS3-210ENST00000551492 GTF3C3Q9Y5Q9 886 aa32.66■■■□□ 2.82
NPAS3-210ENST00000551492 CSRNP3Q8WYN3 585 aa32.64■■■□□ 2.81
NPAS3-210ENST00000551492 UBTFP17480 764 aaKnown RBP32.59■■■□□ 2.81
NPAS3-210ENST00000551492 TOP2BQ02880 1626 aa32.57■■■□□ 2.8
NPAS3-210ENST00000551492 RAD54L2Q9Y4B4 1467 aa32.57■■■□□ 2.8
NPAS3-210ENST00000551492 KIF21AQ7Z4S6 1674 aa32.56■■■□□ 2.8
NPAS3-210ENST00000551492 CEP164Q9UPV0 1460 aa32.56■■■□□ 2.8
NPAS3-210ENST00000551492 LAMC3Q9Y6N6 1575 aa32.54■■■□□ 2.8
NPAS3-210ENST00000551492 PDS5BQ9NTI5 1447 aa32.53■■■□□ 2.8
NPAS3-210ENST00000551492 FGD5Q6ZNL6 1462 aa32.51■■■□□ 2.79
NPAS3-210ENST00000551492 URB2Q14146 1524 aaKnown RBP32.49■■■□□ 2.79
NPAS3-210ENST00000551492 PRDM2Q13029 1718 aa32.47■■■□□ 2.79
NPAS3-210ENST00000551492 ERCC6Q03468 1493 aa32.44■■■□□ 2.78
NPAS3-210ENST00000551492 TOPBP1Q92547 1522 aa32.43■■■□□ 2.78
NPAS3-210ENST00000551492 BIVM-ERCC5R4GMW8 1640 aa32.39■■■□□ 2.78
NPAS3-210ENST00000551492 CUX2O14529 1486 aa32.39■■■□□ 2.78
NPAS3-210ENST00000551492 TDRD9Q8NDG6 1382 aaKnown RBP32.38■■■□□ 2.77
NPAS3-210ENST00000551492 POLA1P09884 1462 aaPredicted RBP32.33■■■□□ 2.77
NPAS3-210ENST00000551492 CENPBP07199 599 aaPredicted RBP32.33■■■□□ 2.77
NPAS3-210ENST00000551492 DNMBPQ6XZF7 1577 aa32.24■■■□□ 2.75
NPAS3-210ENST00000551492 RAPGEF2Q9Y4G8 1499 aa32.23■■■□□ 2.75
NPAS3-210ENST00000551492 KIF27Q86VH2 1401 aa32.19■■■□□ 2.74
NPAS3-210ENST00000551492 IGF1RP08069 1367 aa32.12■■■□□ 2.73
NPAS3-210ENST00000551492 AQRO60306 1485 aaKnown RBP eCLIP32.11■■■□□ 2.73
NPAS3-210ENST00000551492 MRC2Q9UBG0 1479 aa32.1■■■□□ 2.73
NPAS3-210ENST00000551492 EEA1Q15075 1411 aa32.06■■■□□ 2.72
NPAS3-210ENST00000551492 ZNF608Q9ULD9 1512 aaPredicted RBP32.03■■■□□ 2.72
NPAS3-210ENST00000551492 GOLGA3Q08378 1498 aa31.98■■■□□ 2.71
NPAS3-210ENST00000551492 P3H3Q8IVL6 736 aa31.98■■■□□ 2.71
NPAS3-210ENST00000551492 CARMIL1Q5VZK9 1371 aa31.96■■■□□ 2.71
NPAS3-210ENST00000551492 CEP162Q5TB80 1403 aa31.95■■■□□ 2.71
NPAS3-210ENST00000551492 FBLN2P98095 1184 aa31.95■■■□□ 2.71
NPAS3-210ENST00000551492 ZEB1P37275 1124 aaPredicted RBP31.94■■■□□ 2.7
NPAS3-210ENST00000551492 ERICH6Q7L0X2 663 aa31.93■■■□□ 2.7
NPAS3-210ENST00000551492 ABCA10Q8WWZ4 1543 aa31.91■■■□□ 2.7
NPAS3-210ENST00000551492 TNIKQ9UKE5 1360 aa31.87■■■□□ 2.69
NPAS3-210ENST00000551492 PRXQ9BXM0 1461 aa31.87■■■□□ 2.69
NPAS3-210ENST00000551492 APLP2Q06481 763 aa31.87■■■□□ 2.69
NPAS3-210ENST00000551492 GAPVD1Q14C86 1478 aa31.86■■■□□ 2.69
NPAS3-210ENST00000551492 THOC2Q8NI27 1593 aaKnown RBP31.81■■■□□ 2.68
NPAS3-210ENST00000551492 TARBP1Q13395 1621 aaKnown RBP31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms