Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TPM1P09493 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.01■□□□□ 0.31
TPM1P09493 AC140479.7-201ENST00000636301 2332 ntBASIC17.01■□□□□ 0.31
TPM1P09493 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 PCDHGB8P-201ENST00000502926 1973 ntBASIC17■□□□□ 0.31
TPM1P09493 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TPM1P09493 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17■□□□□ 0.31
TPM1P09493 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 RPL13AP23-201ENST00000480739 586 ntBASIC17■□□□□ 0.31
TPM1P09493 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17■□□□□ 0.31
TPM1P09493 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17■□□□□ 0.31
TPM1P09493 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
TPM1P09493 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TPM1P09493 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17■□□□□ 0.31
TPM1P09493 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17■□□□□ 0.31
TPM1P09493 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
TPM1P09493 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TPM1P09493 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TPM1P09493 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TPM1P09493 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17■□□□□ 0.31
TPM1P09493 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 HLA-A-201ENST00000376802 1334 ntBASIC16.99■□□□□ 0.31
TPM1P09493 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 AL359183.1-201ENST00000623796 2132 ntBASIC16.99■□□□□ 0.31
TPM1P09493 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
TPM1P09493 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.99■□□□□ 0.31
TPM1P09493 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.99■□□□□ 0.31
TPM1P09493 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.99■□□□□ 0.31
TPM1P09493 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
TPM1P09493 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 REXO1L2P-201ENST00000425429 2069 ntBASIC16.99■□□□□ 0.31
TPM1P09493 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 ZNF259P1-201ENST00000407656 1365 ntBASIC16.99■□□□□ 0.31
TPM1P09493 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.99■□□□□ 0.31
TPM1P09493 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.99■□□□□ 0.31
TPM1P09493 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TPM1P09493 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms