RNA–Protein interactions for RNA: ENST00000273064.10

CNOT9-201, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT9, Length 4,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-201ENST00000273064 NISCHQ9Y2I1 1504 aa27■■□□□ 1.91
CNOT9-201ENST00000273064 DCAF8L2P0C7V8 631 aa26.24■■□□□ 1.79
CNOT9-201ENST00000273064 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
CNOT9-201ENST00000273064 SUPT5HO00267 1087 aaKnown RBP25.49■■□□□ 1.67
CNOT9-201ENST00000273064 EHMT2Q96KQ7 1210 aa24.5■■□□□ 1.51
CNOT9-201ENST00000273064 FAM9AQ8IZU1 332 aaPredicted RBP23.96■■□□□ 1.43
CNOT9-201ENST00000273064 PCGF6Q9BYE7 350 aa23.8■■□□□ 1.4
CNOT9-201ENST00000273064 TTBK1Q5TCY1 1321 aaPredicted RBP23.57■■□□□ 1.36
CNOT9-201ENST00000273064 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
CNOT9-201ENST00000273064 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
CNOT9-201ENST00000273064 TRIM41Q8WV44 630 aa23.32■■□□□ 1.32
CNOT9-201ENST00000273064 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
CNOT9-201ENST00000273064 RANGAP1P46060 587 aaPredicted RBP23.17■■□□□ 1.3
CNOT9-201ENST00000273064 ABCC9O60706 1549 aa22.77■■□□□ 1.24
CNOT9-201ENST00000273064 UBTFP17480 764 aaKnown RBP22.74■■□□□ 1.23
CNOT9-201ENST00000273064 HRCP23327 699 aa22.73■■□□□ 1.23
CNOT9-201ENST00000273064 CCER1Q8TC90 406 aaPredicted RBP22.65■■□□□ 1.22
CNOT9-201ENST00000273064 APLP2Q06481 763 aa22.63■■□□□ 1.21
CNOT9-201ENST00000273064 TRIM26Q12899 539 aaPredicted RBP22.58■■□□□ 1.21
CNOT9-201ENST00000273064 PABPN1Q86U42 306 aaKnown RBP eCLIP22.58■■□□□ 1.212e-6■■■□□ 19.1
CNOT9-201ENST00000273064 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
CNOT9-201ENST00000273064 ATP1B4Q9UN42 357 aaPredicted RBP22.39■■□□□ 1.17
CNOT9-201ENST00000273064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.33■■□□□ 1.17
CNOT9-201ENST00000273064 MYO15BQ96JP2 1530 aa22.28■■□□□ 1.16
CNOT9-201ENST00000273064 ZEB1P37275 1124 aaPredicted RBP22.24■■□□□ 1.15
CNOT9-201ENST00000273064 HNRNPUL2Q1KMD3 747 aaKnown RBP22.22■■□□□ 1.15
CNOT9-201ENST00000273064 YTHDC1Q96MU7 727 aaKnown RBP22.21■■□□□ 1.15
CNOT9-201ENST00000273064 ITGAEP38570 1179 aa22.15■■□□□ 1.14
CNOT9-201ENST00000273064 SCRIBQ14160 1630 aa22.14■■□□□ 1.13
CNOT9-201ENST00000273064 CCDC180Q9P1Z9 1646 aa21.9■■□□□ 1.1
CNOT9-201ENST00000273064 CENPBP07199 599 aaPredicted RBP21.81■■□□□ 1.08
CNOT9-201ENST00000273064 RSF1Q96T23 1441 aaPredicted RBP21.76■■□□□ 1.07
CNOT9-201ENST00000273064 CSRNP3Q8WYN3 585 aa21.69■■□□□ 1.06
CNOT9-201ENST00000273064 DIEXFQ68CQ4 756 aaKnown RBP21.66■■□□□ 1.06
CNOT9-201ENST00000273064 CECR2Q9BXF3 1484 aa21.6■■□□□ 1.05
CNOT9-201ENST00000273064 P3H3Q8IVL6 736 aa21.55■■□□□ 1.04
CNOT9-201ENST00000273064 CNGB1Q14028 1251 aaPredicted RBP21.52■■□□□ 1.04
CNOT9-201ENST00000273064 DCAF1Q9Y4B6 1507 aa21.52■■□□□ 1.03
CNOT9-201ENST00000273064 FAM50AQ14320 339 aaKnown RBP21.45■■□□□ 1.03
CNOT9-201ENST00000273064 NEUROD1Q13562 356 aa21.39■■□□□ 1.01
CNOT9-201ENST00000273064 ARID3CA6NKF2 412 aa21.38■■□□□ 1.01
CNOT9-201ENST00000273064 PELP1Q8IZL8 1130 aaKnown RBP21.31■■□□□ 1
CNOT9-201ENST00000273064 GTF3C3Q9Y5Q9 886 aa21.31■■□□□ 1
CNOT9-201ENST00000273064 POLR3GLQ9BT43 218 aa21.29■■□□□ 1
CNOT9-201ENST00000273064 RB1CC1Q8TDY2 1594 aa21.28■■□□□ 1
CNOT9-201ENST00000273064 MROH2BQ7Z745 1585 aa21.22■□□□□ 0.99
CNOT9-201ENST00000273064 ZNF316A6NFI3 1004 aaPredicted RBP21.2■□□□□ 0.98
CNOT9-201ENST00000273064 SOGA1O94964 1423 aa21.12■□□□□ 0.97
CNOT9-201ENST00000273064 CEP162Q5TB80 1403 aa21.07■□□□□ 0.96
CNOT9-201ENST00000273064 FBLN2P98095 1184 aa21.07■□□□□ 0.96
CNOT9-201ENST00000273064 TRIM52Q96A61 297 aa21.05■□□□□ 0.96
CNOT9-201ENST00000273064 BCANQ96GW7 911 aa21.05■□□□□ 0.96
CNOT9-201ENST00000273064 ACIN1Q9UKV3 1341 aaKnown RBP21.05■□□□□ 0.96
CNOT9-201ENST00000273064 NACADO15069 1562 aa21.05■□□□□ 0.96
CNOT9-201ENST00000273064 ABCC8Q09428 1581 aa21.03■□□□□ 0.96
CNOT9-201ENST00000273064 NEFLP07196 543 aa21.02■□□□□ 0.96
CNOT9-201ENST00000273064 SCAF1Q9H7N4 1312 aaKnown RBP21.01■□□□□ 0.95
CNOT9-201ENST00000273064 HIRIP3Q9BW71 556 aaPredicted RBP20.99■□□□□ 0.95
CNOT9-201ENST00000273064 CLIP1P30622 1438 aa20.97■□□□□ 0.95
CNOT9-201ENST00000273064 CCDC88BA6NC98 1476 aa20.97■□□□□ 0.95
CNOT9-201ENST00000273064 WRNQ14191 1432 aaPredicted RBP eCLIP20.96■□□□□ 0.95
CNOT9-201ENST00000273064 WIZO95785 1651 aa20.95■□□□□ 0.94
CNOT9-201ENST00000273064 MIER1Q8N108 512 aa20.94■□□□□ 0.94
CNOT9-201ENST00000273064 ZNF326Q5BKZ1 582 aaKnown RBP20.91■□□□□ 0.94
CNOT9-201ENST00000273064 MYT1LQ9UL68 1186 aa20.87■□□□□ 0.93
CNOT9-201ENST00000273064 BAZ1AQ9NRL2 1556 aaPredicted RBP20.86■□□□□ 0.93
CNOT9-201ENST00000273064 CHIC2Q9UKJ5 165 aa20.84■□□□□ 0.93
CNOT9-201ENST00000273064 DDX10Q13206 875 aaKnown RBP20.82■□□□□ 0.92
CNOT9-201ENST00000273064 TNIKQ9UKE5 1360 aa20.79■□□□□ 0.92
CNOT9-201ENST00000273064 BAZ1BQ9UIG0 1483 aaKnown RBP20.79■□□□□ 0.92
CNOT9-201ENST00000273064 RUSC2Q8N2Y8 1516 aa20.79■□□□□ 0.92
CNOT9-201ENST00000273064 ZNF777Q9ULD5 760 aaPredicted RBP20.77■□□□□ 0.92
CNOT9-201ENST00000273064 GOLGA3Q08378 1498 aa20.76■□□□□ 0.91
CNOT9-201ENST00000273064 ERICH6Q7L0X2 663 aa20.71■□□□□ 0.91
CNOT9-201ENST00000273064 KANK4Q5T7N3 995 aaPredicted RBP20.7■□□□□ 0.9
CNOT9-201ENST00000273064 ANP32CO43423 234 aa20.64■□□□□ 0.89
CNOT9-201ENST00000273064 SIN3AQ96ST3 1273 aa20.63■□□□□ 0.89
CNOT9-201ENST00000273064 EEA1Q15075 1411 aa20.6■□□□□ 0.89
CNOT9-201ENST00000273064 SENP3-EIF4A1A0A087X0R7 540 aa20.59■□□□□ 0.89
CNOT9-201ENST00000273064 RRP7BPQ9NSQ0 103 aa20.59■□□□□ 0.89
CNOT9-201ENST00000273064 CEP164Q9UPV0 1460 aa20.57■□□□□ 0.88
CNOT9-201ENST00000273064 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
CNOT9-201ENST00000273064 MTUS2Q5JR59 1369 aa20.48■□□□□ 0.87
CNOT9-201ENST00000273064 TONSLQ96HA7 1378 aa20.48■□□□□ 0.87
CNOT9-201ENST00000273064 FKBP8Q14318 412 aa20.47■□□□□ 0.87
CNOT9-201ENST00000273064 SLC4A1APQ9BWU0 796 aaKnown RBP20.46■□□□□ 0.87
CNOT9-201ENST00000273064 TOP2AP11388 1531 aaKnown RBP20.43■□□□□ 0.86
CNOT9-201ENST00000273064 RAPGEF2Q9Y4G8 1499 aa20.43■□□□□ 0.86
CNOT9-201ENST00000273064 IRX6P78412 446 aaPredicted RBP20.42■□□□□ 0.86
CNOT9-201ENST00000273064 CUX2O14529 1486 aa20.41■□□□□ 0.86
CNOT9-201ENST00000273064 FAM9BQ8IZU0 186 aa20.4■□□□□ 0.86
CNOT9-201ENST00000273064 HNRNPUQ00839 825 aaKnown RBP eCLIP20.39■□□□□ 0.86
CNOT9-201ENST00000273064 SALL2Q9Y467 1007 aaPredicted RBP20.38■□□□□ 0.85
CNOT9-201ENST00000273064 VPS8Q8N3P4 1428 aa20.37■□□□□ 0.85
CNOT9-201ENST00000273064 SMARCA4P51532 1647 aa20.36■□□□□ 0.85
CNOT9-201ENST00000273064 CARMIL1Q5VZK9 1371 aa20.35■□□□□ 0.85
CNOT9-201ENST00000273064 KDM2AQ9Y2K7 1162 aa20.34■□□□□ 0.85
CNOT9-201ENST00000273064 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
CNOT9-201ENST00000273064 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.31■□□□□ 0.84
CNOT9-201ENST00000273064 CCNB3Q8WWL7 1395 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms