RNA–Protein interactions for RNA: ENST00000372748.7

COL9A2-202, Transcript of collagen type IX alpha 2 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A2, Length 2,862 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A2-202ENST00000372748 NISCHQ9Y2I1 1504 aa29.88■■■□□ 2.37
COL9A2-202ENST00000372748 SHROOM4Q9ULL8 1493 aa25.78■■□□□ 1.72
COL9A2-202ENST00000372748 SUPT5HO00267 1087 aaKnown RBP25.3■■□□□ 1.64
COL9A2-202ENST00000372748 CCDC180Q9P1Z9 1646 aa25.27■■□□□ 1.64
COL9A2-202ENST00000372748 ZCCHC6Q5VYS8 1495 aaKnown RBP25.25■■□□□ 1.63
COL9A2-202ENST00000372748 DCAF8L2P0C7V8 631 aa25.11■■□□□ 1.61
COL9A2-202ENST00000372748 HRCP23327 699 aa24.78■■□□□ 1.56
COL9A2-202ENST00000372748 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
COL9A2-202ENST00000372748 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
COL9A2-202ENST00000372748 PCGF6Q9BYE7 350 aa24.57■■□□□ 1.52
COL9A2-202ENST00000372748 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
COL9A2-202ENST00000372748 DCAF1Q9Y4B6 1507 aa24.38■■□□□ 1.49
COL9A2-202ENST00000372748 ABCC9O60706 1549 aa24.16■■□□□ 1.46
COL9A2-202ENST00000372748 LOC105371045A0A1W2PR82 267 aa24.1■■□□□ 1.45
COL9A2-202ENST00000372748 SCRIBQ14160 1630 aa23.9■■□□□ 1.42
COL9A2-202ENST00000372748 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
COL9A2-202ENST00000372748 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
COL9A2-202ENST00000372748 TRIM41Q8WV44 630 aa23.49■■□□□ 1.35
COL9A2-202ENST00000372748 RB1CC1Q8TDY2 1594 aa23.49■■□□□ 1.35
COL9A2-202ENST00000372748 FAM9AQ8IZU1 332 aaPredicted RBP23.43■■□□□ 1.34
COL9A2-202ENST00000372748 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
COL9A2-202ENST00000372748 NACADO15069 1562 aa23.4■■□□□ 1.34
COL9A2-202ENST00000372748 ZEB1P37275 1124 aaPredicted RBP23.4■■□□□ 1.34
COL9A2-202ENST00000372748 EHMT2Q96KQ7 1210 aa23.34■■□□□ 1.33
COL9A2-202ENST00000372748 MROH2BQ7Z745 1585 aa23.3■■□□□ 1.32
COL9A2-202ENST00000372748 SCAF1Q9H7N4 1312 aaKnown RBP23.27■■□□□ 1.32
COL9A2-202ENST00000372748 WIZO95785 1651 aa23.19■■□□□ 1.3
COL9A2-202ENST00000372748 PELP1Q8IZL8 1130 aaKnown RBP23.19■■□□□ 1.3
COL9A2-202ENST00000372748 PABPN1Q86U42 306 aaKnown RBP eCLIP23.03■■□□□ 1.281e-7■■■■□ 23.6
COL9A2-202ENST00000372748 BAZ1AQ9NRL2 1556 aaPredicted RBP22.94■■□□□ 1.26
COL9A2-202ENST00000372748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.92■■□□□ 1.26
COL9A2-202ENST00000372748 CCER1Q8TC90 406 aaPredicted RBP22.83■■□□□ 1.25
COL9A2-202ENST00000372748 NEUROD1Q13562 356 aa22.79■■□□□ 1.24
COL9A2-202ENST00000372748 ACIN1Q9UKV3 1341 aaKnown RBP22.78■■□□□ 1.24
COL9A2-202ENST00000372748 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
COL9A2-202ENST00000372748 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
COL9A2-202ENST00000372748 UNC13AQ9UPW8 1703 aa22.74■■□□□ 1.23
COL9A2-202ENST00000372748 ABCC8Q09428 1581 aa22.73■■□□□ 1.23
COL9A2-202ENST00000372748 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
COL9A2-202ENST00000372748 CCDC88BA6NC98 1476 aa22.72■■□□□ 1.23
COL9A2-202ENST00000372748 TTBK1Q5TCY1 1321 aaPredicted RBP22.7■■□□□ 1.22
COL9A2-202ENST00000372748 DIEXFQ68CQ4 756 aaKnown RBP22.65■■□□□ 1.22
COL9A2-202ENST00000372748 SMARCA2P51531 1590 aa22.64■■□□□ 1.22
COL9A2-202ENST00000372748 GTF3C3Q9Y5Q9 886 aa22.63■■□□□ 1.21
COL9A2-202ENST00000372748 CENPBP07199 599 aaPredicted RBP22.54■■□□□ 1.2
COL9A2-202ENST00000372748 SOGA1O94964 1423 aa22.53■■□□□ 1.2
COL9A2-202ENST00000372748 BICRAQ9NZM4 1560 aa22.53■■□□□ 1.2
COL9A2-202ENST00000372748 RUSC2Q8N2Y8 1516 aa22.44■■□□□ 1.18
COL9A2-202ENST00000372748 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
COL9A2-202ENST00000372748 CSRNP3Q8WYN3 585 aa22.4■■□□□ 1.18
COL9A2-202ENST00000372748 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
COL9A2-202ENST00000372748 YTHDC1Q96MU7 727 aaKnown RBP22.33■■□□□ 1.17
COL9A2-202ENST00000372748 TNIKQ9UKE5 1360 aa22.32■■□□□ 1.16
COL9A2-202ENST00000372748 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
COL9A2-202ENST00000372748 ZNF316A6NFI3 1004 aaPredicted RBP22.27■■□□□ 1.16
COL9A2-202ENST00000372748 EEA1Q15075 1411 aa22.25■■□□□ 1.15
COL9A2-202ENST00000372748 PEG3Q9GZU2 1588 aa22.22■■□□□ 1.15
COL9A2-202ENST00000372748 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
COL9A2-202ENST00000372748 GOLGA3Q08378 1498 aa22.18■■□□□ 1.14
COL9A2-202ENST00000372748 SYNJ1O43426 1573 aa22.17■■□□□ 1.14
COL9A2-202ENST00000372748 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
COL9A2-202ENST00000372748 MIER1Q8N108 512 aa22.13■■□□□ 1.13
COL9A2-202ENST00000372748 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
COL9A2-202ENST00000372748 RANGAP1P46060 587 aaPredicted RBP22.1■■□□□ 1.13
COL9A2-202ENST00000372748 MYT1Q01538 1121 aa22.1■■□□□ 1.13
COL9A2-202ENST00000372748 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
COL9A2-202ENST00000372748 CLIP1P30622 1438 aa21.98■■□□□ 1.11
COL9A2-202ENST00000372748 KIF21BO75037 1637 aa21.96■■□□□ 1.11
COL9A2-202ENST00000372748 RAPGEF2Q9Y4G8 1499 aa21.95■■□□□ 1.11
COL9A2-202ENST00000372748 APLP2Q06481 763 aa21.87■■□□□ 1.09
COL9A2-202ENST00000372748 VPS8Q8N3P4 1428 aa21.84■■□□□ 1.09
COL9A2-202ENST00000372748 TOP2BQ02880 1626 aa21.83■■□□□ 1.08
COL9A2-202ENST00000372748 BIVM-ERCC5R4GMW8 1640 aa21.71■■□□□ 1.07
COL9A2-202ENST00000372748 NCAPD3P42695 1498 aa21.7■■□□□ 1.06
COL9A2-202ENST00000372748 CUX1P39880 1505 aa21.66■■□□□ 1.06
COL9A2-202ENST00000372748 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
COL9A2-202ENST00000372748 PRXQ9BXM0 1461 aa21.65■■□□□ 1.06
COL9A2-202ENST00000372748 DNAJC5BQ9UF47 199 aa21.62■■□□□ 1.05
COL9A2-202ENST00000372748 CC2D2AQ9P2K1 1620 aa21.62■■□□□ 1.05
COL9A2-202ENST00000372748 KANK4Q5T7N3 995 aaPredicted RBP21.61■■□□□ 1.05
COL9A2-202ENST00000372748 SUPT16HQ9Y5B9 1047 aaKnown RBP21.61■■□□□ 1.05
COL9A2-202ENST00000372748 ARAP1Q96P48 1450 aa21.59■■□□□ 1.05
COL9A2-202ENST00000372748 ERICH3Q5RHP9 1530 aa21.59■■□□□ 1.05
COL9A2-202ENST00000372748 KIF27Q86VH2 1401 aa21.58■■□□□ 1.04
COL9A2-202ENST00000372748 CFTRP13569 1480 aa21.56■■□□□ 1.04
COL9A2-202ENST00000372748 DHX57Q6P158 1386 aaKnown RBP21.55■■□□□ 1.04
COL9A2-202ENST00000372748 CLSPNQ9HAW4 1339 aa21.47■■□□□ 1.03
COL9A2-202ENST00000372748 ITGAEP38570 1179 aa21.42■■□□□ 1.02
COL9A2-202ENST00000372748 CUX2O14529 1486 aa21.41■■□□□ 1.02
COL9A2-202ENST00000372748 ARHGAP35Q9NRY4 1499 aa21.41■■□□□ 1.02
COL9A2-202ENST00000372748 TSHZ2Q9NRE2 1034 aa21.4■■□□□ 1.02
COL9A2-202ENST00000372748 KCNH8Q96L42 1107 aa21.39■■□□□ 1.01
COL9A2-202ENST00000372748 IGF1RP08069 1367 aa21.37■■□□□ 1.01
COL9A2-202ENST00000372748 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
COL9A2-202ENST00000372748 RRBP1Q9P2E9 1410 aaKnown RBP21.31■■□□□ 1
COL9A2-202ENST00000372748 BCANQ96GW7 911 aa21.3■■□□□ 1
COL9A2-202ENST00000372748 FGD5Q6ZNL6 1462 aa21.3■■□□□ 1
COL9A2-202ENST00000372748 CARMIL1Q5VZK9 1371 aa21.3■■□□□ 1
COL9A2-202ENST00000372748 CCNB3Q8WWL7 1395 aa21.29■■□□□ 1
COL9A2-202ENST00000372748 PRDM2Q13029 1718 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms