Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.78□□□□□ -0.04
SEMA3DO95025 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.78□□□□□ -0.04
SEMA3DO95025 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 AC004840.1-201ENST00000636359 365 ntBASIC14.78□□□□□ -0.04
SEMA3DO95025 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 CICP11-201ENST00000434745 2827 ntBASIC14.78□□□□□ -0.04
SEMA3DO95025 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.77□□□□□ -0.04
SEMA3DO95025 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.77□□□□□ -0.04
SEMA3DO95025 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SEMA3DO95025 AGAP7P-201ENST00000582299 2062 ntBASIC14.77□□□□□ -0.04
SEMA3DO95025 AGAP14-201ENST00000624701 2060 ntBASIC14.77□□□□□ -0.04
SEMA3DO95025 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
SEMA3DO95025 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SEMA3DO95025 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.77□□□□□ -0.04
SEMA3DO95025 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
SEMA3DO95025 ZBED1P1-201ENST00000502364 1930 ntBASIC14.77□□□□□ -0.04
SEMA3DO95025 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
SEMA3DO95025 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
SEMA3DO95025 FAM8A3P-201ENST00000427218 844 ntBASIC14.77□□□□□ -0.05
SEMA3DO95025 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.77□□□□□ -0.05
SEMA3DO95025 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.77□□□□□ -0.05
SEMA3DO95025 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.77□□□□□ -0.05
SEMA3DO95025 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.77□□□□□ -0.05
SEMA3DO95025 AC005498.2-205ENST00000593218 784 ntBASIC14.77□□□□□ -0.05
SEMA3DO95025 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.77□□□□□ -0.05
SEMA3DO95025 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.77□□□□□ -0.05
SEMA3DO95025 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
SEMA3DO95025 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
SEMA3DO95025 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SEMA3DO95025 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SEMA3DO95025 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.76□□□□□ -0.05
SEMA3DO95025 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.76□□□□□ -0.05
SEMA3DO95025 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
SEMA3DO95025 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
SEMA3DO95025 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SEMA3DO95025 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.76□□□□□ -0.05
SEMA3DO95025 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms