RNA–Protein interactions for RNA: ENST00000381870.7

CTNS-202, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

TSL 1 (best) BASIC

Gene CTNS, Length 2,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-202ENST00000381870 NISCHQ9Y2I1 1504 aa28.15■■■□□ 2.1
CTNS-202ENST00000381870 HRCP23327 699 aa25.46■■□□□ 1.67
CTNS-202ENST00000381870 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
CTNS-202ENST00000381870 PPARGC1BQ86YN6 1023 aaKnown RBP25■■□□□ 1.59
CTNS-202ENST00000381870 SUPT5HO00267 1087 aaKnown RBP24.99■■□□□ 1.59
CTNS-202ENST00000381870 PCGF6Q9BYE7 350 aa24.93■■□□□ 1.58
CTNS-202ENST00000381870 MYO15BQ96JP2 1530 aa24.85■■□□□ 1.57
CTNS-202ENST00000381870 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
CTNS-202ENST00000381870 PELP1Q8IZL8 1130 aaKnown RBP24.58■■□□□ 1.53
CTNS-202ENST00000381870 DCAF1Q9Y4B6 1507 aa24.27■■□□□ 1.48
CTNS-202ENST00000381870 SCAF1Q9H7N4 1312 aaKnown RBP24.17■■□□□ 1.46
CTNS-202ENST00000381870 LOC105371045A0A1W2PR82 267 aa24.09■■□□□ 1.45
CTNS-202ENST00000381870 TRIM26Q12899 539 aaPredicted RBP24.07■■□□□ 1.44
CTNS-202ENST00000381870 CCDC180Q9P1Z9 1646 aa24.04■■□□□ 1.44
CTNS-202ENST00000381870 ZCCHC6Q5VYS8 1495 aaKnown RBP23.98■■□□□ 1.43
CTNS-202ENST00000381870 ZEB1P37275 1124 aaPredicted RBP23.85■■□□□ 1.41
CTNS-202ENST00000381870 MYT1Q01538 1121 aa23.6■■□□□ 1.37
CTNS-202ENST00000381870 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
CTNS-202ENST00000381870 ACIN1Q9UKV3 1341 aaKnown RBP23.52■■□□□ 1.36
CTNS-202ENST00000381870 ABCC9O60706 1549 aa23.5■■□□□ 1.35
CTNS-202ENST00000381870 NEUROD1Q13562 356 aa23.48■■□□□ 1.35
CTNS-202ENST00000381870 GTF3C3Q9Y5Q9 886 aa23.34■■□□□ 1.33
CTNS-202ENST00000381870 CENPBP07199 599 aaPredicted RBP23.16■■□□□ 1.3
CTNS-202ENST00000381870 FAM9AQ8IZU1 332 aaPredicted RBP23.12■■□□□ 1.29
CTNS-202ENST00000381870 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.09■■□□□ 1.29
CTNS-202ENST00000381870 DIEXFQ68CQ4 756 aaKnown RBP23.08■■□□□ 1.29
CTNS-202ENST00000381870 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
CTNS-202ENST00000381870 EHMT2Q96KQ7 1210 aa23.06■■□□□ 1.28
CTNS-202ENST00000381870 CCER1Q8TC90 406 aaPredicted RBP23.01■■□□□ 1.27
CTNS-202ENST00000381870 YTHDC1Q96MU7 727 aaKnown RBP22.74■■□□□ 1.23
CTNS-202ENST00000381870 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
CTNS-202ENST00000381870 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
CTNS-202ENST00000381870 ZNF316A6NFI3 1004 aaPredicted RBP22.6■■□□□ 1.21
CTNS-202ENST00000381870 NACADO15069 1562 aa22.58■■□□□ 1.2
CTNS-202ENST00000381870 TTBK1Q5TCY1 1321 aaPredicted RBP22.53■■□□□ 1.2
CTNS-202ENST00000381870 MIER1Q8N108 512 aa22.51■■□□□ 1.19
CTNS-202ENST00000381870 SCRIBQ14160 1630 aa22.44■■□□□ 1.18
CTNS-202ENST00000381870 PABPN1Q86U42 306 aaKnown RBP eCLIP22.29■■□□□ 1.16
CTNS-202ENST00000381870 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
CTNS-202ENST00000381870 BCL11AQ9H165 835 aa22.2■■□□□ 1.14
CTNS-202ENST00000381870 SUPT16HQ9Y5B9 1047 aaKnown RBP22.2■■□□□ 1.14
CTNS-202ENST00000381870 ANP32EQ9BTT0 268 aa22.19■■□□□ 1.14
CTNS-202ENST00000381870 CEP162Q5TB80 1403 aa22.16■■□□□ 1.14
CTNS-202ENST00000381870 TSHZ2Q9NRE2 1034 aa22.14■■□□□ 1.13
CTNS-202ENST00000381870 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
CTNS-202ENST00000381870 CLSPNQ9HAW4 1339 aa22.05■■□□□ 1.12
CTNS-202ENST00000381870 UNC13AQ9UPW8 1703 aa22.05■■□□□ 1.12
CTNS-202ENST00000381870 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
CTNS-202ENST00000381870 HNRNPUL2Q1KMD3 747 aaKnown RBP22.04■■□□□ 1.12
CTNS-202ENST00000381870 WIZO95785 1651 aa21.99■■□□□ 1.11
CTNS-202ENST00000381870 CSRNP3Q8WYN3 585 aa21.99■■□□□ 1.11
CTNS-202ENST00000381870 EIF4G1Q04637 1599 aaKnown RBP21.98■■□□□ 1.11
CTNS-202ENST00000381870 TNIKQ9UKE5 1360 aa21.98■■□□□ 1.11
CTNS-202ENST00000381870 CCDC88BA6NC98 1476 aa21.95■■□□□ 1.1
CTNS-202ENST00000381870 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
CTNS-202ENST00000381870 BICRAQ9NZM4 1560 aa21.9■■□□□ 1.1
CTNS-202ENST00000381870 SOGA1O94964 1423 aa21.89■■□□□ 1.09
CTNS-202ENST00000381870 UBTFP17480 764 aaKnown RBP21.88■■□□□ 1.09
CTNS-202ENST00000381870 BAZ1AQ9NRL2 1556 aaPredicted RBP21.79■■□□□ 1.08
CTNS-202ENST00000381870 RUSC2Q8N2Y8 1516 aa21.77■■□□□ 1.08
CTNS-202ENST00000381870 BCANQ96GW7 911 aa21.74■■□□□ 1.07
CTNS-202ENST00000381870 GOLGA3Q08378 1498 aa21.68■■□□□ 1.06
CTNS-202ENST00000381870 EEA1Q15075 1411 aa21.66■■□□□ 1.06
CTNS-202ENST00000381870 KCNH8Q96L42 1107 aa21.65■■□□□ 1.06
CTNS-202ENST00000381870 DHX57Q6P158 1386 aaKnown RBP21.61■■□□□ 1.05
CTNS-202ENST00000381870 FKBP8Q14318 412 aa21.6■■□□□ 1.05
CTNS-202ENST00000381870 RBM19Q9Y4C8 960 aaKnown RBP21.6■■□□□ 1.05
CTNS-202ENST00000381870 CLIP1P30622 1438 aa21.54■■□□□ 1.04
CTNS-202ENST00000381870 VPS8Q8N3P4 1428 aa21.52■■□□□ 1.04
CTNS-202ENST00000381870 APLP2Q06481 763 aa21.52■■□□□ 1.04
CTNS-202ENST00000381870 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
CTNS-202ENST00000381870 SMARCA2P51531 1590 aa21.48■■□□□ 1.03
CTNS-202ENST00000381870 MSH5O43196 834 aa21.44■■□□□ 1.02
CTNS-202ENST00000381870 CEP164Q9UPV0 1460 aa21.44■■□□□ 1.02
CTNS-202ENST00000381870 ITGAEP38570 1179 aa21.42■■□□□ 1.02
CTNS-202ENST00000381870 RANGAP1P46060 587 aaPredicted RBP21.41■■□□□ 1.02
CTNS-202ENST00000381870 KIF21BO75037 1637 aa21.37■■□□□ 1.01
CTNS-202ENST00000381870 NEFLP07196 543 aa21.35■■□□□ 1.01
CTNS-202ENST00000381870 SMARCA4P51532 1647 aa21.34■■□□□ 1.01
CTNS-202ENST00000381870 PRKCSHP14314 528 aaPredicted RBP21.28■■□□□ 1
CTNS-202ENST00000381870 RAPGEF2Q9Y4G8 1499 aa21.27■■□□□ 1
CTNS-202ENST00000381870 DDX10Q13206 875 aaKnown RBP21.27■■□□□ 1
CTNS-202ENST00000381870 TRIM52Q96A61 297 aa21.25■□□□□ 0.99
CTNS-202ENST00000381870 BAZ1BQ9UIG0 1483 aaKnown RBP21.24■□□□□ 0.99
CTNS-202ENST00000381870 KANK4Q5T7N3 995 aaPredicted RBP21.23■□□□□ 0.99
CTNS-202ENST00000381870 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
CTNS-202ENST00000381870 FANCIQ9NVI1 1328 aa21.19■□□□□ 0.98
CTNS-202ENST00000381870 ERICH6Q7L0X2 663 aa21.17■□□□□ 0.98
CTNS-202ENST00000381870 DNAJC5BQ9UF47 199 aa21.17■□□□□ 0.98
CTNS-202ENST00000381870 CUX2O14529 1486 aa21.15■□□□□ 0.98
CTNS-202ENST00000381870 ATAD2BQ9ULI0 1458 aa21.14■□□□□ 0.98
CTNS-202ENST00000381870 RRBP1Q9P2E9 1410 aaKnown RBP21.14■□□□□ 0.98
CTNS-202ENST00000381870 PPP1R15AO75807 674 aaPredicted RBP21.13■□□□□ 0.97
CTNS-202ENST00000381870 MAPKBP1O60336 1514 aa21.1■□□□□ 0.97
CTNS-202ENST00000381870 CC2D2AQ9P2K1 1620 aa21.08■□□□□ 0.97
CTNS-202ENST00000381870 ARAP1Q96P48 1450 aa21.08■□□□□ 0.97
CTNS-202ENST00000381870 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
CTNS-202ENST00000381870 CCER2I3L3R5 266 aa21.06■□□□□ 0.96
CTNS-202ENST00000381870 CDK11AQ9UQ88 783 aaPredicted RBP21.06■□□□□ 0.96
CTNS-202ENST00000381870 HIRIP3Q9BW71 556 aaPredicted RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms