Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC42Q96M95 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC42Q96M95 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 MCCD1P2-201ENST00000423228 335 ntBASIC16.78■□□□□ 0.28
CCDC42Q96M95 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 AC105021.1-202ENST00000570572 669 ntBASIC16.78■□□□□ 0.28
CCDC42Q96M95 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC42Q96M95 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC42Q96M95 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.77■□□□□ 0.28
CCDC42Q96M95 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 FDX1P1-201ENST00000449115 551 ntBASIC16.77■□□□□ 0.28
CCDC42Q96M95 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 AC040169.1-201ENST00000565382 521 ntBASIC16.77■□□□□ 0.28
CCDC42Q96M95 C20orf181-201ENST00000623918 480 ntBASIC16.77■□□□□ 0.28
CCDC42Q96M95 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC42Q96M95 AC007326.2-201ENST00000624224 7579 ntBASIC16.77■□□□□ 0.28
CCDC42Q96M95 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC42Q96M95 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC42Q96M95 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC42Q96M95 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC42Q96M95 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC42Q96M95 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.27
CCDC42Q96M95 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AL359258.3-201ENST00000622910 2331 ntBASIC16.76■□□□□ 0.27
CCDC42Q96M95 AC140479.7-201ENST00000636301 2332 ntBASIC16.76■□□□□ 0.27
CCDC42Q96M95 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 INTS4P1-203ENST00000641008 3683 ntBASIC16.76■□□□□ 0.27
CCDC42Q96M95 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms