RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
USP28-214ENST00000545540 SHROOM4Q9ULL8 1493 aa26.86■■□□□ 1.89
USP28-214ENST00000545540 SUPT5HO00267 1087 aaKnown RBP26.42■■□□□ 1.82
USP28-214ENST00000545540 DCAF8L2P0C7V8 631 aa26.18■■□□□ 1.78
USP28-214ENST00000545540 ZCCHC6Q5VYS8 1495 aaKnown RBP25.57■■□□□ 1.68
USP28-214ENST00000545540 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
USP28-214ENST00000545540 MYO15BQ96JP2 1530 aa25.3■■□□□ 1.64
USP28-214ENST00000545540 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
USP28-214ENST00000545540 PCGF6Q9BYE7 350 aa25.06■■□□□ 1.6
USP28-214ENST00000545540 LOC105371045A0A1W2PR82 267 aa25■■□□□ 1.59
USP28-214ENST00000545540 HRCP23327 699 aa24.79■■□□□ 1.56
USP28-214ENST00000545540 PPARGC1BQ86YN6 1023 aaKnown RBP24.77■■□□□ 1.56
USP28-214ENST00000545540 EHMT2Q96KQ7 1210 aa24.7■■□□□ 1.55
USP28-214ENST00000545540 FAM9AQ8IZU1 332 aaPredicted RBP24.56■■□□□ 1.52
USP28-214ENST00000545540 DCAF1Q9Y4B6 1507 aa24.42■■□□□ 1.5
USP28-214ENST00000545540 SCRIBQ14160 1630 aa24.37■■□□□ 1.49
USP28-214ENST00000545540 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
USP28-214ENST00000545540 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
USP28-214ENST00000545540 ABCC9O60706 1549 aa24.17■■□□□ 1.46
USP28-214ENST00000545540 TRIM26Q12899 539 aaPredicted RBP24.14■■□□□ 1.45
USP28-214ENST00000545540 RB1CC1Q8TDY2 1594 aa24.02■■□□□ 1.43
USP28-214ENST00000545540 CECR2Q9BXF3 1484 aa23.99■■□□□ 1.43
USP28-214ENST00000545540 TTBK1Q5TCY1 1321 aaPredicted RBP23.85■■□□□ 1.41
USP28-214ENST00000545540 MROH2BQ7Z745 1585 aa23.77■■□□□ 1.4
USP28-214ENST00000545540 WIZO95785 1651 aa23.64■■□□□ 1.38
USP28-214ENST00000545540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.56■■□□□ 1.36
USP28-214ENST00000545540 NACADO15069 1562 aa23.49■■□□□ 1.35
USP28-214ENST00000545540 PABPN1Q86U42 306 aaKnown RBP eCLIP23.47■■□□□ 1.35
USP28-214ENST00000545540 ZEB1P37275 1124 aaPredicted RBP23.43■■□□□ 1.34
USP28-214ENST00000545540 CCER1Q8TC90 406 aaPredicted RBP23.37■■□□□ 1.33
USP28-214ENST00000545540 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
USP28-214ENST00000545540 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
USP28-214ENST00000545540 UBTFP17480 764 aaKnown RBP23.26■■□□□ 1.31
USP28-214ENST00000545540 RANGAP1P46060 587 aaPredicted RBP23.24■■□□□ 1.31
USP28-214ENST00000545540 SOGA1O94964 1423 aa23.21■■□□□ 1.31
USP28-214ENST00000545540 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
USP28-214ENST00000545540 RUSC2Q8N2Y8 1516 aa23.14■■□□□ 1.29
USP28-214ENST00000545540 SCAF1Q9H7N4 1312 aaKnown RBP23.13■■□□□ 1.29
USP28-214ENST00000545540 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
USP28-214ENST00000545540 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
USP28-214ENST00000545540 EIF4G1Q04637 1599 aaKnown RBP23■■□□□ 1.27
USP28-214ENST00000545540 SMARCA4P51532 1647 aa23■■□□□ 1.27
USP28-214ENST00000545540 TOP2AP11388 1531 aaKnown RBP22.99■■□□□ 1.27
USP28-214ENST00000545540 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
USP28-214ENST00000545540 HNRNPUL2Q1KMD3 747 aaKnown RBP22.97■■□□□ 1.27
USP28-214ENST00000545540 DIEXFQ68CQ4 756 aaKnown RBP22.9■■□□□ 1.26
USP28-214ENST00000545540 NEUROD1Q13562 356 aa22.86■■□□□ 1.25
USP28-214ENST00000545540 UNC13AQ9UPW8 1703 aa22.86■■□□□ 1.25
USP28-214ENST00000545540 TNIKQ9UKE5 1360 aa22.81■■□□□ 1.24
USP28-214ENST00000545540 YTHDC1Q96MU7 727 aaKnown RBP22.77■■□□□ 1.24
USP28-214ENST00000545540 WRNQ14191 1432 aaPredicted RBP eCLIP22.76■■□□□ 1.23
USP28-214ENST00000545540 ACIN1Q9UKV3 1341 aaKnown RBP22.7■■□□□ 1.22
USP28-214ENST00000545540 BICRAQ9NZM4 1560 aa22.66■■□□□ 1.22
USP28-214ENST00000545540 GTF3C3Q9Y5Q9 886 aa22.65■■□□□ 1.22
USP28-214ENST00000545540 GOLGA3Q08378 1498 aa22.64■■□□□ 1.21
USP28-214ENST00000545540 APLP2Q06481 763 aa22.63■■□□□ 1.21
USP28-214ENST00000545540 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
USP28-214ENST00000545540 CLIP1P30622 1438 aa22.57■■□□□ 1.2
USP28-214ENST00000545540 ZNF316A6NFI3 1004 aaPredicted RBP22.56■■□□□ 1.2
USP28-214ENST00000545540 EEA1Q15075 1411 aa22.55■■□□□ 1.2
USP28-214ENST00000545540 RAPGEF2Q9Y4G8 1499 aa22.53■■□□□ 1.2
USP28-214ENST00000545540 ATAD2BQ9ULI0 1458 aa22.51■■□□□ 1.19
USP28-214ENST00000545540 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
USP28-214ENST00000545540 MIER1Q8N108 512 aa22.48■■□□□ 1.19
USP28-214ENST00000545540 CENPBP07199 599 aaPredicted RBP22.47■■□□□ 1.19
USP28-214ENST00000545540 CEP164Q9UPV0 1460 aa22.46■■□□□ 1.19
USP28-214ENST00000545540 ITGAEP38570 1179 aa22.45■■□□□ 1.18
USP28-214ENST00000545540 KANK4Q5T7N3 995 aaPredicted RBP22.4■■□□□ 1.18
USP28-214ENST00000545540 VPS8Q8N3P4 1428 aa22.35■■□□□ 1.17
USP28-214ENST00000545540 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
USP28-214ENST00000545540 KIF21BO75037 1637 aa22.25■■□□□ 1.15
USP28-214ENST00000545540 PELP1Q8IZL8 1130 aaKnown RBP22.22■■□□□ 1.15
USP28-214ENST00000545540 ATP1B4Q9UN42 357 aaPredicted RBP22.19■■□□□ 1.14
USP28-214ENST00000545540 P3H3Q8IVL6 736 aa22.17■■□□□ 1.14
USP28-214ENST00000545540 ARAP1Q96P48 1450 aa22.1■■□□□ 1.13
USP28-214ENST00000545540 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
USP28-214ENST00000545540 DHX57Q6P158 1386 aaKnown RBP22.06■■□□□ 1.12
USP28-214ENST00000545540 CUX1P39880 1505 aa22.05■■□□□ 1.12
USP28-214ENST00000545540 PRXQ9BXM0 1461 aa22.03■■□□□ 1.12
USP28-214ENST00000545540 KIF27Q86VH2 1401 aa21.99■■□□□ 1.11
USP28-214ENST00000545540 FAM50AQ14320 339 aaKnown RBP21.97■■□□□ 1.11
USP28-214ENST00000545540 KCNH8Q96L42 1107 aa21.94■■□□□ 1.1
USP28-214ENST00000545540 HIRIP3Q9BW71 556 aaPredicted RBP21.93■■□□□ 1.1
USP28-214ENST00000545540 CUX2O14529 1486 aa21.91■■□□□ 1.1
USP28-214ENST00000545540 ARHGAP35Q9NRY4 1499 aa21.9■■□□□ 1.1
USP28-214ENST00000545540 NCAPD3P42695 1498 aa21.89■■□□□ 1.1
USP28-214ENST00000545540 SIN3AQ96ST3 1273 aa21.89■■□□□ 1.1
USP28-214ENST00000545540 CCNB3Q8WWL7 1395 aa21.88■■□□□ 1.09
USP28-214ENST00000545540 BIVM-ERCC5R4GMW8 1640 aa21.87■■□□□ 1.09
USP28-214ENST00000545540 IGF1RP08069 1367 aa21.85■■□□□ 1.09
USP28-214ENST00000545540 ERICH3Q5RHP9 1530 aa21.83■■□□□ 1.09
USP28-214ENST00000545540 CFTRP13569 1480 aa21.83■■□□□ 1.08
USP28-214ENST00000545540 RAB3GAP2Q9H2M9 1393 aa21.8■■□□□ 1.08
USP28-214ENST00000545540 CARMIL1Q5VZK9 1371 aa21.79■■□□□ 1.08
USP28-214ENST00000545540 RRBP1Q9P2E9 1410 aaKnown RBP21.76■■□□□ 1.07
USP28-214ENST00000545540 DDX10Q13206 875 aaKnown RBP21.76■■□□□ 1.07
USP28-214ENST00000545540 HMGXB3Q12766 1538 aa21.72■■□□□ 1.07
USP28-214ENST00000545540 PHLDB1Q86UU1 1377 aa21.72■■□□□ 1.07
USP28-214ENST00000545540 CLSPNQ9HAW4 1339 aa21.71■■□□□ 1.07
USP28-214ENST00000545540 FGD5Q6ZNL6 1462 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms