RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 NISCHQ9Y2I1 1504 aa29.5■■■□□ 2.31
UBE2D4-201ENST00000222402 SHROOM4Q9ULL8 1493 aa26.19■■□□□ 1.78
UBE2D4-201ENST00000222402 DCAF8L2P0C7V8 631 aa26.18■■□□□ 1.78
UBE2D4-201ENST00000222402 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
UBE2D4-201ENST00000222402 ZCCHC6Q5VYS8 1495 aaKnown RBP24.79■■□□□ 1.56
UBE2D4-201ENST00000222402 CCDC180Q9P1Z9 1646 aa24.68■■□□□ 1.54
UBE2D4-201ENST00000222402 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
UBE2D4-201ENST00000222402 PCGF6Q9BYE7 350 aa24.3■■□□□ 1.48
UBE2D4-201ENST00000222402 EHMT2Q96KQ7 1210 aa24.19■■□□□ 1.46
UBE2D4-201ENST00000222402 FAM9AQ8IZU1 332 aaPredicted RBP24.12■■□□□ 1.45
UBE2D4-201ENST00000222402 LOC105371045A0A1W2PR82 267 aa24.09■■□□□ 1.45
UBE2D4-201ENST00000222402 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
UBE2D4-201ENST00000222402 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
UBE2D4-201ENST00000222402 ABCC9O60706 1549 aa23.89■■□□□ 1.41
UBE2D4-201ENST00000222402 HRCP23327 699 aa23.85■■□□□ 1.41
UBE2D4-201ENST00000222402 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
UBE2D4-201ENST00000222402 SCRIBQ14160 1630 aa23.76■■□□□ 1.39
UBE2D4-201ENST00000222402 TRIM26Q12899 539 aaPredicted RBP23.59■■□□□ 1.37
UBE2D4-201ENST00000222402 PPARGC1BQ86YN6 1023 aaKnown RBP23.52■■□□□ 1.36
UBE2D4-201ENST00000222402 RSF1Q96T23 1441 aaPredicted RBP23.49■■□□□ 1.35
UBE2D4-201ENST00000222402 TTBK1Q5TCY1 1321 aaPredicted RBP23.37■■□□□ 1.33
UBE2D4-201ENST00000222402 ZEB1P37275 1124 aaPredicted RBP23.25■■□□□ 1.31
UBE2D4-201ENST00000222402 NACADO15069 1562 aa23.19■■□□□ 1.3
UBE2D4-201ENST00000222402 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
UBE2D4-201ENST00000222402 CECR2Q9BXF3 1484 aa23.17■■□□□ 1.3
UBE2D4-201ENST00000222402 UBTFP17480 764 aaKnown RBP23.14■■□□□ 1.3
UBE2D4-201ENST00000222402 RB1CC1Q8TDY2 1594 aa23.09■■□□□ 1.29
UBE2D4-201ENST00000222402 CCER1Q8TC90 406 aaPredicted RBP23.06■■□□□ 1.28
UBE2D4-201ENST00000222402 RANGAP1P46060 587 aaPredicted RBP22.98■■□□□ 1.27
UBE2D4-201ENST00000222402 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
UBE2D4-201ENST00000222402 APLP2Q06481 763 aa22.91■■□□□ 1.26
UBE2D4-201ENST00000222402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.85■■□□□ 1.25
UBE2D4-201ENST00000222402 WIZO95785 1651 aa22.77■■□□□ 1.24
UBE2D4-201ENST00000222402 BAZ1AQ9NRL2 1556 aaPredicted RBP22.77■■□□□ 1.24
UBE2D4-201ENST00000222402 CSRNP3Q8WYN3 585 aa22.7■■□□□ 1.22
UBE2D4-201ENST00000222402 HNRNPUL2Q1KMD3 747 aaKnown RBP22.56■■□□□ 1.2
UBE2D4-201ENST00000222402 CCDC88BA6NC98 1476 aa22.52■■□□□ 1.2
UBE2D4-201ENST00000222402 ABCC8Q09428 1581 aa22.5■■□□□ 1.19
UBE2D4-201ENST00000222402 TOP2AP11388 1531 aaKnown RBP22.42■■□□□ 1.18
UBE2D4-201ENST00000222402 SOGA1O94964 1423 aa22.42■■□□□ 1.18
UBE2D4-201ENST00000222402 CEP162Q5TB80 1403 aa22.41■■□□□ 1.18
UBE2D4-201ENST00000222402 SMARCA4P51532 1647 aa22.38■■□□□ 1.17
UBE2D4-201ENST00000222402 WRNQ14191 1432 aaPredicted RBP eCLIP22.35■■□□□ 1.17
UBE2D4-201ENST00000222402 CENPBP07199 599 aaPredicted RBP22.34■■□□□ 1.17
UBE2D4-201ENST00000222402 DIEXFQ68CQ4 756 aaKnown RBP22.32■■□□□ 1.16
UBE2D4-201ENST00000222402 EEA1Q15075 1411 aa22.31■■□□□ 1.16
UBE2D4-201ENST00000222402 TNIKQ9UKE5 1360 aa22.3■■□□□ 1.16
UBE2D4-201ENST00000222402 ATP1B4Q9UN42 357 aaPredicted RBP22.26■■□□□ 1.15
UBE2D4-201ENST00000222402 BAZ1BQ9UIG0 1483 aaKnown RBP22.24■■□□□ 1.15
UBE2D4-201ENST00000222402 GOLGA3Q08378 1498 aa22.24■■□□□ 1.15
UBE2D4-201ENST00000222402 YTHDC1Q96MU7 727 aaKnown RBP22.23■■□□□ 1.15
UBE2D4-201ENST00000222402 SMARCA2P51531 1590 aa22.22■■□□□ 1.15
UBE2D4-201ENST00000222402 ITGAEP38570 1179 aa22.2■■□□□ 1.14
UBE2D4-201ENST00000222402 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
UBE2D4-201ENST00000222402 CLIP1P30622 1438 aa22.16■■□□□ 1.14
UBE2D4-201ENST00000222402 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
UBE2D4-201ENST00000222402 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
UBE2D4-201ENST00000222402 ATAD2BQ9ULI0 1458 aa22.03■■□□□ 1.12
UBE2D4-201ENST00000222402 ACIN1Q9UKV3 1341 aaKnown RBP21.93■■□□□ 1.1
UBE2D4-201ENST00000222402 SCAF1Q9H7N4 1312 aaKnown RBP21.91■■□□□ 1.1
UBE2D4-201ENST00000222402 UNC13AQ9UPW8 1703 aa21.88■■□□□ 1.09
UBE2D4-201ENST00000222402 GTF3C3Q9Y5Q9 886 aa21.87■■□□□ 1.09
UBE2D4-201ENST00000222402 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
UBE2D4-201ENST00000222402 PELP1Q8IZL8 1130 aaKnown RBP21.86■■□□□ 1.09
UBE2D4-201ENST00000222402 P3H3Q8IVL6 736 aa21.85■■□□□ 1.09
UBE2D4-201ENST00000222402 NEUROD1Q13562 356 aa21.84■■□□□ 1.09
UBE2D4-201ENST00000222402 VPS8Q8N3P4 1428 aa21.83■■□□□ 1.09
UBE2D4-201ENST00000222402 EIF4G1Q04637 1599 aaKnown RBP21.83■■□□□ 1.09
UBE2D4-201ENST00000222402 RAPGEF2Q9Y4G8 1499 aa21.82■■□□□ 1.08
UBE2D4-201ENST00000222402 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
UBE2D4-201ENST00000222402 KIF27Q86VH2 1401 aa21.79■■□□□ 1.08
UBE2D4-201ENST00000222402 SYNJ1O43426 1573 aa21.76■■□□□ 1.07
UBE2D4-201ENST00000222402 MIER1Q8N108 512 aa21.66■■□□□ 1.06
UBE2D4-201ENST00000222402 KANK4Q5T7N3 995 aaPredicted RBP21.66■■□□□ 1.06
UBE2D4-201ENST00000222402 PEG3Q9GZU2 1588 aa21.59■■□□□ 1.05
UBE2D4-201ENST00000222402 CUX2O14529 1486 aa21.58■■□□□ 1.05
UBE2D4-201ENST00000222402 KIF21BO75037 1637 aa21.57■■□□□ 1.04
UBE2D4-201ENST00000222402 NCAPD3P42695 1498 aa21.52■■□□□ 1.04
UBE2D4-201ENST00000222402 CARMIL1Q5VZK9 1371 aa21.5■■□□□ 1.03
UBE2D4-201ENST00000222402 CCNB3Q8WWL7 1395 aa21.46■■□□□ 1.03
UBE2D4-201ENST00000222402 TOP2BQ02880 1626 aa21.45■■□□□ 1.02
UBE2D4-201ENST00000222402 CADPSQ9ULU8 1353 aa21.44■■□□□ 1.02
UBE2D4-201ENST00000222402 CLSPNQ9HAW4 1339 aa21.4■■□□□ 1.02
UBE2D4-201ENST00000222402 ARID3CA6NKF2 412 aa21.37■■□□□ 1.01
UBE2D4-201ENST00000222402 PRXQ9BXM0 1461 aa21.37■■□□□ 1.01
UBE2D4-201ENST00000222402 CUX1P39880 1505 aa21.36■■□□□ 1.01
UBE2D4-201ENST00000222402 CFTRP13569 1480 aa21.35■■□□□ 1.01
UBE2D4-201ENST00000222402 HMGXB3Q12766 1538 aa21.33■■□□□ 1.01
UBE2D4-201ENST00000222402 ARAP1Q96P48 1450 aa21.33■■□□□ 1
UBE2D4-201ENST00000222402 IGF1RP08069 1367 aa21.32■■□□□ 1
UBE2D4-201ENST00000222402 ERICH3Q5RHP9 1530 aa21.31■■□□□ 1
UBE2D4-201ENST00000222402 DHX57Q6P158 1386 aaKnown RBP21.31■■□□□ 1
UBE2D4-201ENST00000222402 TRIM52Q96A61 297 aa21.3■■□□□ 1
UBE2D4-201ENST00000222402 MTUS2Q5JR59 1369 aa21.28■■□□□ 1
UBE2D4-201ENST00000222402 DDX10Q13206 875 aaKnown RBP21.27■■□□□ 1
UBE2D4-201ENST00000222402 FHAD1B1AJZ9 1412 aa21.27■□□□□ 0.99
UBE2D4-201ENST00000222402 SIN3AQ96ST3 1273 aa21.26■□□□□ 0.99
UBE2D4-201ENST00000222402 NEFLP07196 543 aa21.25■□□□□ 0.99
UBE2D4-201ENST00000222402 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
UBE2D4-201ENST00000222402 HIRIP3Q9BW71 556 aaPredicted RBP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms