Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX2P35548 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX2P35548 WASH3P-207ENST00000560956 1394 ntBASIC14.86□□□□□ -0.03
MSX2P35548 FO538757.1-201ENST00000623083 1397 ntBASIC14.86□□□□□ -0.03
MSX2P35548 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 AP000845.1-201ENST00000581677 2131 ntBASIC14.86□□□□□ -0.03
MSX2P35548 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
MSX2P35548 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
MSX2P35548 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 AC140658.5-201ENST00000438532 169 ntBASIC14.86□□□□□ -0.03
MSX2P35548 AC018712.1-201ENST00000455767 687 ntBASIC14.86□□□□□ -0.03
MSX2P35548 PHKG1P2-201ENST00000457537 863 ntBASIC14.86□□□□□ -0.03
MSX2P35548 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX2P35548 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
MSX2P35548 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
MSX2P35548 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX2P35548 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX2P35548 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 FOXO1B-201ENST00000504678 1527 ntBASIC14.86□□□□□ -0.03
MSX2P35548 AC113367.3-201ENST00000508316 1912 ntBASIC14.86□□□□□ -0.03
MSX2P35548 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX2P35548 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
MSX2P35548 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 AL137784.3-201ENST00000623858 2288 ntBASIC14.85□□□□□ -0.03
MSX2P35548 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
MSX2P35548 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX2P35548 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 CICP20-201ENST00000443330 2801 ntBASIC14.85□□□□□ -0.03
MSX2P35548 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 582.3 ms