RNA–Protein interactions for RNA: ENST00000355422.10

GFRA1-201, Transcript of GDNF family receptor alpha 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene GFRA1, Length 2,583 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1-201ENST00000355422 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
GFRA1-201ENST00000355422 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
GFRA1-201ENST00000355422 SUPT5HO00267 1087 aaKnown RBP25■■□□□ 1.59
GFRA1-201ENST00000355422 ZCCHC6Q5VYS8 1495 aaKnown RBP24.87■■□□□ 1.57
GFRA1-201ENST00000355422 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
GFRA1-201ENST00000355422 DCAF8L2P0C7V8 631 aa24.41■■□□□ 1.5
GFRA1-201ENST00000355422 CHIC1Q5VXU3 224 aa24.41■■□□□ 1.5
GFRA1-201ENST00000355422 MYO15BQ96JP2 1530 aa24.38■■□□□ 1.49
GFRA1-201ENST00000355422 HRCP23327 699 aa24.13■■□□□ 1.45
GFRA1-201ENST00000355422 DCAF1Q9Y4B6 1507 aa24.01■■□□□ 1.43
GFRA1-201ENST00000355422 PCGF6Q9BYE7 350 aa23.98■■□□□ 1.43
GFRA1-201ENST00000355422 LOC105371045A0A1W2PR82 267 aa23.75■■□□□ 1.39
GFRA1-201ENST00000355422 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
GFRA1-201ENST00000355422 ABCC9O60706 1549 aa23.51■■□□□ 1.35
GFRA1-201ENST00000355422 TRIM26Q12899 539 aaPredicted RBP23.41■■□□□ 1.34
GFRA1-201ENST00000355422 RSF1Q96T23 1441 aaPredicted RBP23.37■■□□□ 1.33
GFRA1-201ENST00000355422 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
GFRA1-201ENST00000355422 TRIM41Q8WV44 630 aa23.23■■□□□ 1.31
GFRA1-201ENST00000355422 RB1CC1Q8TDY2 1594 aa23.15■■□□□ 1.3
GFRA1-201ENST00000355422 FAM9AQ8IZU1 332 aaPredicted RBP23.11■■□□□ 1.29
GFRA1-201ENST00000355422 ZEB1P37275 1124 aaPredicted RBP22.98■■□□□ 1.27
GFRA1-201ENST00000355422 EHMT2Q96KQ7 1210 aa22.96■■□□□ 1.27
GFRA1-201ENST00000355422 CECR2Q9BXF3 1484 aa22.94■■□□□ 1.26
GFRA1-201ENST00000355422 MROH2BQ7Z745 1585 aa22.87■■□□□ 1.25
GFRA1-201ENST00000355422 NACADO15069 1562 aa22.84■■□□□ 1.25
GFRA1-201ENST00000355422 WIZO95785 1651 aa22.75■■□□□ 1.23
GFRA1-201ENST00000355422 BAZ1AQ9NRL2 1556 aaPredicted RBP22.58■■□□□ 1.21
GFRA1-201ENST00000355422 EIF4G1Q04637 1599 aaKnown RBP22.52■■□□□ 1.2
GFRA1-201ENST00000355422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.46■■□□□ 1.19
GFRA1-201ENST00000355422 SCAF1Q9H7N4 1312 aaKnown RBP22.43■■□□□ 1.18
GFRA1-201ENST00000355422 CCER1Q8TC90 406 aaPredicted RBP22.4■■□□□ 1.18
GFRA1-201ENST00000355422 ABCC8Q09428 1581 aa22.37■■□□□ 1.17
GFRA1-201ENST00000355422 CCDC88BA6NC98 1476 aa22.35■■□□□ 1.17
GFRA1-201ENST00000355422 TOP2AP11388 1531 aaKnown RBP22.35■■□□□ 1.17
GFRA1-201ENST00000355422 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
GFRA1-201ENST00000355422 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
GFRA1-201ENST00000355422 SMARCA2P51531 1590 aa22.26■■□□□ 1.15
GFRA1-201ENST00000355422 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.15
GFRA1-201ENST00000355422 SOGA1O94964 1423 aa22.24■■□□□ 1.15
GFRA1-201ENST00000355422 CEP162Q5TB80 1403 aa22.24■■□□□ 1.15
GFRA1-201ENST00000355422 PELP1Q8IZL8 1130 aaKnown RBP22.21■■□□□ 1.15
GFRA1-201ENST00000355422 TNIKQ9UKE5 1360 aa22.18■■□□□ 1.14
GFRA1-201ENST00000355422 CSRNP3Q8WYN3 585 aa22.14■■□□□ 1.13
GFRA1-201ENST00000355422 RUSC2Q8N2Y8 1516 aa22.12■■□□□ 1.13
GFRA1-201ENST00000355422 DIEXFQ68CQ4 756 aaKnown RBP22.11■■□□□ 1.13
GFRA1-201ENST00000355422 ACIN1Q9UKV3 1341 aaKnown RBP22.11■■□□□ 1.13
GFRA1-201ENST00000355422 UBTFP17480 764 aaKnown RBP22.1■■□□□ 1.13
GFRA1-201ENST00000355422 UNC13AQ9UPW8 1703 aa22.09■■□□□ 1.13
GFRA1-201ENST00000355422 EEA1Q15075 1411 aa22.08■■□□□ 1.13
GFRA1-201ENST00000355422 NEUROD1Q13562 356 aa22.08■■□□□ 1.12
GFRA1-201ENST00000355422 GOLGA3Q08378 1498 aa21.98■■□□□ 1.11
GFRA1-201ENST00000355422 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
GFRA1-201ENST00000355422 CENPBP07199 599 aaPredicted RBP21.92■■□□□ 1.1
GFRA1-201ENST00000355422 GTF3C3Q9Y5Q9 886 aa21.88■■□□□ 1.09
GFRA1-201ENST00000355422 ZNF316A6NFI3 1004 aaPredicted RBP21.87■■□□□ 1.09
GFRA1-201ENST00000355422 BICRAQ9NZM4 1560 aa21.84■■□□□ 1.09
GFRA1-201ENST00000355422 CEP164Q9UPV0 1460 aa21.82■■□□□ 1.08
GFRA1-201ENST00000355422 SYNJ1O43426 1573 aa21.81■■□□□ 1.08
GFRA1-201ENST00000355422 HNRNPUL2Q1KMD3 747 aaKnown RBP21.81■■□□□ 1.08
GFRA1-201ENST00000355422 PEG3Q9GZU2 1588 aa21.8■■□□□ 1.08
GFRA1-201ENST00000355422 CLIP1P30622 1438 aa21.77■■□□□ 1.08
GFRA1-201ENST00000355422 KIF21BO75037 1637 aa21.76■■□□□ 1.07
GFRA1-201ENST00000355422 VPS8Q8N3P4 1428 aa21.69■■□□□ 1.06
GFRA1-201ENST00000355422 ATAD2BQ9ULI0 1458 aa21.67■■□□□ 1.06
GFRA1-201ENST00000355422 RAPGEF2Q9Y4G8 1499 aa21.67■■□□□ 1.06
GFRA1-201ENST00000355422 RANGAP1P46060 587 aaPredicted RBP21.65■■□□□ 1.06
GFRA1-201ENST00000355422 APLP2Q06481 763 aa21.65■■□□□ 1.06
GFRA1-201ENST00000355422 YTHDC1Q96MU7 727 aaKnown RBP21.65■■□□□ 1.06
GFRA1-201ENST00000355422 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
GFRA1-201ENST00000355422 MIER1Q8N108 512 aa21.62■■□□□ 1.05
GFRA1-201ENST00000355422 TOP2BQ02880 1626 aa21.49■■□□□ 1.03
GFRA1-201ENST00000355422 PRXQ9BXM0 1461 aa21.39■■□□□ 1.01
GFRA1-201ENST00000355422 BIVM-ERCC5R4GMW8 1640 aa21.38■■□□□ 1.01
GFRA1-201ENST00000355422 ARAP1Q96P48 1450 aa21.37■■□□□ 1.01
GFRA1-201ENST00000355422 KANK4Q5T7N3 995 aaPredicted RBP21.37■■□□□ 1.01
GFRA1-201ENST00000355422 ERICH3Q5RHP9 1530 aa21.37■■□□□ 1.01
GFRA1-201ENST00000355422 DHX57Q6P158 1386 aaKnown RBP21.36■■□□□ 1.01
GFRA1-201ENST00000355422 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
GFRA1-201ENST00000355422 CUX1P39880 1505 aa21.26■□□□□ 0.99
GFRA1-201ENST00000355422 KIF27Q86VH2 1401 aa21.23■□□□□ 0.99
GFRA1-201ENST00000355422 RRBP1Q9P2E9 1410 aaKnown RBP21.23■□□□□ 0.99
GFRA1-201ENST00000355422 NCAPD3P42695 1498 aa21.18■□□□□ 0.98
GFRA1-201ENST00000355422 HMGXB3Q12766 1538 aa21.16■□□□□ 0.98
GFRA1-201ENST00000355422 ARHGAP35Q9NRY4 1499 aa21.15■□□□□ 0.98
GFRA1-201ENST00000355422 CCNB3Q8WWL7 1395 aa21.15■□□□□ 0.98
GFRA1-201ENST00000355422 ITGAEP38570 1179 aa21.13■□□□□ 0.97
GFRA1-201ENST00000355422 CUX2O14529 1486 aa21.12■□□□□ 0.97
GFRA1-201ENST00000355422 MYT1Q01538 1121 aa21.11■□□□□ 0.97
GFRA1-201ENST00000355422 CFTRP13569 1480 aa21.1■□□□□ 0.97
GFRA1-201ENST00000355422 RAB3GAP2Q9H2M9 1393 aa21.01■□□□□ 0.95
GFRA1-201ENST00000355422 SUPT16HQ9Y5B9 1047 aaKnown RBP21■□□□□ 0.95
GFRA1-201ENST00000355422 IGF1RP08069 1367 aa21■□□□□ 0.95
GFRA1-201ENST00000355422 MAPKBP1O60336 1514 aa20.95■□□□□ 0.94
GFRA1-201ENST00000355422 TIAM1Q13009 1591 aa20.94■□□□□ 0.94
GFRA1-201ENST00000355422 CARMIL1Q5VZK9 1371 aa20.92■□□□□ 0.94
GFRA1-201ENST00000355422 MAP3K1Q13233 1512 aa20.91■□□□□ 0.94
GFRA1-201ENST00000355422 SETD5Q9C0A6 1442 aa20.9■□□□□ 0.94
GFRA1-201ENST00000355422 KCNH8Q96L42 1107 aa20.9■□□□□ 0.94
GFRA1-201ENST00000355422 LRRC9Q6ZRR7 1453 aa20.89■□□□□ 0.93
GFRA1-201ENST00000355422 PHLDB1Q86UU1 1377 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms