RNA–Protein interactions for RNA: ENST00000330943.8

SNX20-202, Transcript of sorting nexin 20, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX20, Length 2,904 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-202ENST00000330943 NISCHQ9Y2I1 1504 aa28.35■■■□□ 2.13
SNX20-202ENST00000330943 SHROOM4Q9ULL8 1493 aa24.79■■□□□ 1.56
SNX20-202ENST00000330943 SUPT5HO00267 1087 aaKnown RBP24.55■■□□□ 1.52
SNX20-202ENST00000330943 DCAF8L2P0C7V8 631 aa24.35■■□□□ 1.49
SNX20-202ENST00000330943 HRCP23327 699 aa24.21■■□□□ 1.47
SNX20-202ENST00000330943 MYO15BQ96JP2 1530 aa24.11■■□□□ 1.45
SNX20-202ENST00000330943 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
SNX20-202ENST00000330943 CHIC1Q5VXU3 224 aa24.02■■□□□ 1.44
SNX20-202ENST00000330943 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
SNX20-202ENST00000330943 CCDC180Q9P1Z9 1646 aa23.78■■□□□ 1.4
SNX20-202ENST00000330943 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
SNX20-202ENST00000330943 DCAF1Q9Y4B6 1507 aa23.51■■□□□ 1.35
SNX20-202ENST00000330943 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
SNX20-202ENST00000330943 TRIM26Q12899 539 aaPredicted RBP23.24■■□□□ 1.31
SNX20-202ENST00000330943 ABCC9O60706 1549 aa22.96■■□□□ 1.27
SNX20-202ENST00000330943 ZEB1P37275 1124 aaPredicted RBP22.92■■□□□ 1.26
SNX20-202ENST00000330943 PELP1Q8IZL8 1130 aaKnown RBP22.78■■□□□ 1.24
SNX20-202ENST00000330943 SCRIBQ14160 1630 aa22.75■■□□□ 1.23
SNX20-202ENST00000330943 TRIM41Q8WV44 630 aa22.75■■□□□ 1.23
SNX20-202ENST00000330943 FAM9AQ8IZU1 332 aaPredicted RBP22.7■■□□□ 1.22
SNX20-202ENST00000330943 SCAF1Q9H7N4 1312 aaKnown RBP22.68■■□□□ 1.22
SNX20-202ENST00000330943 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
SNX20-202ENST00000330943 EHMT2Q96KQ7 1210 aa22.58■■□□□ 1.21
SNX20-202ENST00000330943 RB1CC1Q8TDY2 1594 aa22.58■■□□□ 1.2
SNX20-202ENST00000330943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.29■■□□□ 1.16
SNX20-202ENST00000330943 CECR2Q9BXF3 1484 aa22.26■■□□□ 1.15
SNX20-202ENST00000330943 CCER1Q8TC90 406 aaPredicted RBP22.25■■□□□ 1.15
SNX20-202ENST00000330943 ACIN1Q9UKV3 1341 aaKnown RBP22.25■■□□□ 1.15
SNX20-202ENST00000330943 NEUROD1Q13562 356 aa22.21■■□□□ 1.15
SNX20-202ENST00000330943 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
SNX20-202ENST00000330943 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
SNX20-202ENST00000330943 NACADO15069 1562 aa22.09■■□□□ 1.13
SNX20-202ENST00000330943 DIEXFQ68CQ4 756 aaKnown RBP22.09■■□□□ 1.13
SNX20-202ENST00000330943 GTF3C3Q9Y5Q9 886 aa22.06■■□□□ 1.12
SNX20-202ENST00000330943 WIZO95785 1651 aa22.05■■□□□ 1.12
SNX20-202ENST00000330943 CENPBP07199 599 aaPredicted RBP22.05■■□□□ 1.12
SNX20-202ENST00000330943 TTBK1Q5TCY1 1321 aaPredicted RBP21.99■■□□□ 1.11
SNX20-202ENST00000330943 EIF4G1Q04637 1599 aaKnown RBP21.91■■□□□ 1.1
SNX20-202ENST00000330943 BAZ1AQ9NRL2 1556 aaPredicted RBP21.9■■□□□ 1.1
SNX20-202ENST00000330943 WRNQ14191 1432 aaPredicted RBP eCLIP21.86■■□□□ 1.09
SNX20-202ENST00000330943 CEP162Q5TB80 1403 aa21.83■■□□□ 1.08
SNX20-202ENST00000330943 ABCC8Q09428 1581 aa21.8■■□□□ 1.08
SNX20-202ENST00000330943 CCDC88BA6NC98 1476 aa21.78■■□□□ 1.08
SNX20-202ENST00000330943 MYT1Q01538 1121 aa21.76■■□□□ 1.07
SNX20-202ENST00000330943 ZNF316A6NFI3 1004 aaPredicted RBP21.75■■□□□ 1.07
SNX20-202ENST00000330943 YTHDC1Q96MU7 727 aaKnown RBP21.7■■□□□ 1.06
SNX20-202ENST00000330943 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
SNX20-202ENST00000330943 SOGA1O94964 1423 aa21.68■■□□□ 1.06
SNX20-202ENST00000330943 TOP2AP11388 1531 aaKnown RBP21.64■■□□□ 1.05
SNX20-202ENST00000330943 UBTFP17480 764 aaKnown RBP21.62■■□□□ 1.05
SNX20-202ENST00000330943 UNC13AQ9UPW8 1703 aa21.62■■□□□ 1.05
SNX20-202ENST00000330943 CSRNP3Q8WYN3 585 aa21.58■■□□□ 1.04
SNX20-202ENST00000330943 SMARCA2P51531 1590 aa21.57■■□□□ 1.04
SNX20-202ENST00000330943 RUSC2Q8N2Y8 1516 aa21.56■■□□□ 1.04
SNX20-202ENST00000330943 MIER1Q8N108 512 aa21.55■■□□□ 1.04
SNX20-202ENST00000330943 EEA1Q15075 1411 aa21.54■■□□□ 1.04
SNX20-202ENST00000330943 HNRNPUL2Q1KMD3 747 aaKnown RBP21.5■■□□□ 1.03
SNX20-202ENST00000330943 SMARCA4P51532 1647 aa21.5■■□□□ 1.03
SNX20-202ENST00000330943 GOLGA3Q08378 1498 aa21.49■■□□□ 1.03
SNX20-202ENST00000330943 BICRAQ9NZM4 1560 aa21.4■■□□□ 1.02
SNX20-202ENST00000330943 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
SNX20-202ENST00000330943 CLIP1P30622 1438 aa21.3■■□□□ 1
SNX20-202ENST00000330943 RANGAP1P46060 587 aaPredicted RBP21.28■■□□□ 1
SNX20-202ENST00000330943 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
SNX20-202ENST00000330943 KIF21BO75037 1637 aa21.25■□□□□ 0.99
SNX20-202ENST00000330943 APLP2Q06481 763 aa21.25■□□□□ 0.99
SNX20-202ENST00000330943 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
SNX20-202ENST00000330943 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
SNX20-202ENST00000330943 RAPGEF2Q9Y4G8 1499 aa21.12■□□□□ 0.97
SNX20-202ENST00000330943 SUPT16HQ9Y5B9 1047 aaKnown RBP21.09■□□□□ 0.97
SNX20-202ENST00000330943 CLSPNQ9HAW4 1339 aa21.07■□□□□ 0.96
SNX20-202ENST00000330943 ATAD2BQ9ULI0 1458 aa21.06■□□□□ 0.96
SNX20-202ENST00000330943 DHX57Q6P158 1386 aaKnown RBP21.06■□□□□ 0.96
SNX20-202ENST00000330943 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
SNX20-202ENST00000330943 KANK4Q5T7N3 995 aaPredicted RBP20.89■□□□□ 0.94
SNX20-202ENST00000330943 TSHZ2Q9NRE2 1034 aa20.89■□□□□ 0.93
SNX20-202ENST00000330943 ARAP1Q96P48 1450 aa20.87■□□□□ 0.93
SNX20-202ENST00000330943 TOP2BQ02880 1626 aa20.83■□□□□ 0.92
SNX20-202ENST00000330943 RRBP1Q9P2E9 1410 aaKnown RBP20.81■□□□□ 0.92
SNX20-202ENST00000330943 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
SNX20-202ENST00000330943 KCNH8Q96L42 1107 aa20.78■□□□□ 0.92
SNX20-202ENST00000330943 PRXQ9BXM0 1461 aa20.78■□□□□ 0.92
SNX20-202ENST00000330943 ITGAEP38570 1179 aa20.76■□□□□ 0.91
SNX20-202ENST00000330943 ANP32EQ9BTT0 268 aa20.75■□□□□ 0.91
SNX20-202ENST00000330943 CUX2O14529 1486 aa20.74■□□□□ 0.91
SNX20-202ENST00000330943 CCNB3Q8WWL7 1395 aa20.74■□□□□ 0.91
SNX20-202ENST00000330943 BIVM-ERCC5R4GMW8 1640 aa20.73■□□□□ 0.91
SNX20-202ENST00000330943 BCANQ96GW7 911 aa20.71■□□□□ 0.91
SNX20-202ENST00000330943 RAB3GAP2Q9H2M9 1393 aa20.65■□□□□ 0.9
SNX20-202ENST00000330943 MAPKBP1O60336 1514 aa20.63■□□□□ 0.89
SNX20-202ENST00000330943 FKBP8Q14318 412 aa20.63■□□□□ 0.89
SNX20-202ENST00000330943 ARHGAP35Q9NRY4 1499 aa20.61■□□□□ 0.89
SNX20-202ENST00000330943 DDX10Q13206 875 aaKnown RBP20.59■□□□□ 0.89
SNX20-202ENST00000330943 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
SNX20-202ENST00000330943 KIF27Q86VH2 1401 aa20.58■□□□□ 0.89
SNX20-202ENST00000330943 NCAPD3P42695 1498 aa20.57■□□□□ 0.88
SNX20-202ENST00000330943 CUX1P39880 1505 aa20.55■□□□□ 0.88
SNX20-202ENST00000330943 WDR97A6NE52 1622 aa20.53■□□□□ 0.88
SNX20-202ENST00000330943 SIN3AQ96ST3 1273 aa20.51■□□□□ 0.87
SNX20-202ENST00000330943 SETD5Q9C0A6 1442 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 256.8 ms