Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP48Q86UV5 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.47■■■□□ 2.15
USP48Q86UV5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP48Q86UV5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC28.47■■■□□ 2.15
USP48Q86UV5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC28.47■■■□□ 2.15
USP48Q86UV5 GAK-223ENST00000628912 497 ntTSL 5 BASIC28.47■■■□□ 2.15
USP48Q86UV5 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP48Q86UV5 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.46■■■□□ 2.15
USP48Q86UV5 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP48Q86UV5 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
USP48Q86UV5 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC28.45■■■□□ 2.15
USP48Q86UV5 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
USP48Q86UV5 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC28.45■■■□□ 2.14
USP48Q86UV5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC28.45■■■□□ 2.14
USP48Q86UV5 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USP48Q86UV5 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
USP48Q86UV5 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USP48Q86UV5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.44■■■□□ 2.14
USP48Q86UV5 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP48Q86UV5 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.44■■■□□ 2.14
USP48Q86UV5 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP48Q86UV5 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
USP48Q86UV5 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
USP48Q86UV5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC28.44■■■□□ 2.14
USP48Q86UV5 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.44■■■□□ 2.14
USP48Q86UV5 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP48Q86UV5 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP48Q86UV5 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
USP48Q86UV5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP48Q86UV5 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC28.43■■■□□ 2.14
USP48Q86UV5 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC28.43■■■□□ 2.14
USP48Q86UV5 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP48Q86UV5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
USP48Q86UV5 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP48Q86UV5 CD72-202ENST00000378430 585 ntTSL 3 BASIC28.42■■■□□ 2.14
USP48Q86UV5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC28.42■■■□□ 2.14
USP48Q86UV5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC28.42■■■□□ 2.14
USP48Q86UV5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC28.42■■■□□ 2.14
USP48Q86UV5 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
USP48Q86UV5 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP48Q86UV5 AC142472.1-201ENST00000612013 1741 ntBASIC28.42■■■□□ 2.14
USP48Q86UV5 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
USP48Q86UV5 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP48Q86UV5 AC135279.3-201ENST00000610945 1311 ntBASIC28.42■■■□□ 2.14
USP48Q86UV5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP48Q86UV5 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC28.41■■■□□ 2.14
USP48Q86UV5 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP48Q86UV5 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP48Q86UV5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP48Q86UV5 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
USP48Q86UV5 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.4■■■□□ 2.14
USP48Q86UV5 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
USP48Q86UV5 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC28.4■■■□□ 2.14
USP48Q86UV5 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
USP48Q86UV5 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
USP48Q86UV5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC28.39■■■□□ 2.14
USP48Q86UV5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC28.39■■■□□ 2.14
USP48Q86UV5 AC104564.3-201ENST00000582367 638 ntBASIC28.39■■■□□ 2.14
USP48Q86UV5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC28.39■■■□□ 2.14
USP48Q86UV5 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
USP48Q86UV5 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
USP48Q86UV5 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.38■■■□□ 2.13
USP48Q86UV5 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP48Q86UV5 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
USP48Q86UV5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC28.38■■■□□ 2.13
USP48Q86UV5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
USP48Q86UV5 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC28.38■■■□□ 2.13
USP48Q86UV5 AC011551.1-201ENST00000614101 683 ntBASIC28.38■■■□□ 2.13
USP48Q86UV5 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP48Q86UV5 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP48Q86UV5 UNC93B3-201ENST00000308076 687 ntBASIC28.37■■■□□ 2.13
USP48Q86UV5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC28.37■■■□□ 2.13
USP48Q86UV5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC28.37■■■□□ 2.13
USP48Q86UV5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 AL031432.3-201ENST00000607698 485 ntBASIC28.37■■■□□ 2.13
USP48Q86UV5 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP48Q86UV5 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
USP48Q86UV5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP48Q86UV5 SUDS3P1-201ENST00000505831 966 ntBASIC28.36■■■□□ 2.13
USP48Q86UV5 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP48Q86UV5 AC093323.1-202ENST00000635031 2045 ntBASIC28.36■■■□□ 2.13
USP48Q86UV5 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.35■■■□□ 2.13
USP48Q86UV5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP48Q86UV5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
USP48Q86UV5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC28.35■■■□□ 2.13
USP48Q86UV5 MIR5787-201ENST00000611784 55 ntBASIC28.35■■■□□ 2.13
USP48Q86UV5 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP48Q86UV5 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP48Q86UV5 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP48Q86UV5 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC28.34■■■□□ 2.13
USP48Q86UV5 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP48Q86UV5 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC28.33■■■□□ 2.13
USP48Q86UV5 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
USP48Q86UV5 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
USP48Q86UV5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC28.33■■■□□ 2.13
USP48Q86UV5 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms