Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.71■□□□□ 0.11
HDDC3Q8N4P3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
HDDC3Q8N4P3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC046158.3-201ENST00000624947 2558 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AL133267.1-201ENST00000398220 340 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC099336.1-201ENST00000417053 1171 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 FO681548.1-201ENST00000455617 1132 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC099548.2-209ENST00000480264 625 ntBASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.7■□□□□ 0.1
HDDC3Q8N4P3 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 AL355864.2-201ENST00000447420 863 ntBASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 BCRP2-202ENST00000447763 634 ntBASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 BCRP6-201ENST00000510112 632 ntBASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 BCRP7-201ENST00000511549 544 ntBASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.69■□□□□ 0.1
HDDC3Q8N4P3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms