RNA–Protein interactions for RNA: ENST00000328642.11

SYNM-201, Transcript of synemin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNM, Length 3,960 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNM-201ENST00000328642 NISCHQ9Y2I1 1504 aa30.48■■■□□ 2.47
SYNM-201ENST00000328642 DCAF8L2P0C7V8 631 aa29.33■■■□□ 2.29
SYNM-201ENST00000328642 SHROOM4Q9ULL8 1493 aa28.39■■■□□ 2.14
SYNM-201ENST00000328642 SUPT5HO00267 1087 aaKnown RBP28.18■■■□□ 2.1
SYNM-201ENST00000328642 EHMT2Q96KQ7 1210 aa27.03■■□□□ 1.92
SYNM-201ENST00000328642 FAM9AQ8IZU1 332 aaPredicted RBP26.47■■□□□ 1.83
SYNM-201ENST00000328642 PCGF6Q9BYE7 350 aa25.94■■□□□ 1.74
SYNM-201ENST00000328642 TTBK1Q5TCY1 1321 aaPredicted RBP25.94■■□□□ 1.74
SYNM-201ENST00000328642 ABCC9O60706 1549 aa25.9■■□□□ 1.74
SYNM-201ENST00000328642 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SYNM-201ENST00000328642 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
SYNM-201ENST00000328642 LOC105371045A0A1W2PR82 267 aa25.78■■□□□ 1.72
SYNM-201ENST00000328642 RANGAP1P46060 587 aaPredicted RBP25.68■■□□□ 1.7
SYNM-201ENST00000328642 PPARGC1BQ86YN6 1023 aaKnown RBP25.62■■□□□ 1.69
SYNM-201ENST00000328642 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
SYNM-201ENST00000328642 ZCCHC6Q5VYS8 1495 aaKnown RBP25.36■■□□□ 1.65
SYNM-201ENST00000328642 UBTFP17480 764 aaKnown RBP25.21■■□□□ 1.63
SYNM-201ENST00000328642 SCRIBQ14160 1630 aa25.02■■□□□ 1.6
SYNM-201ENST00000328642 APLP2Q06481 763 aa25.01■■□□□ 1.59
SYNM-201ENST00000328642 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
SYNM-201ENST00000328642 ATP1B4Q9UN42 357 aaPredicted RBP24.86■■□□□ 1.57
SYNM-201ENST00000328642 CCER1Q8TC90 406 aaPredicted RBP24.78■■□□□ 1.56
SYNM-201ENST00000328642 TRIM26Q12899 539 aaPredicted RBP24.72■■□□□ 1.55
SYNM-201ENST00000328642 HRCP23327 699 aa24.64■■□□□ 1.54
SYNM-201ENST00000328642 MYO15BQ96JP2 1530 aa24.6■■□□□ 1.53
SYNM-201ENST00000328642 HNRNPUL2Q1KMD3 747 aaKnown RBP24.47■■□□□ 1.51
SYNM-201ENST00000328642 ITGAEP38570 1179 aa24.46■■□□□ 1.51
SYNM-201ENST00000328642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.46■■□□□ 1.51
SYNM-201ENST00000328642 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
SYNM-201ENST00000328642 CECR2Q9BXF3 1484 aa24.33■■□□□ 1.49
SYNM-201ENST00000328642 ZEB1P37275 1124 aaPredicted RBP24.22■■□□□ 1.47
SYNM-201ENST00000328642 CSRNP3Q8WYN3 585 aa24.14■■□□□ 1.45
SYNM-201ENST00000328642 YTHDC1Q96MU7 727 aaKnown RBP24.1■■□□□ 1.45
SYNM-201ENST00000328642 P3H3Q8IVL6 736 aa24.03■■□□□ 1.44
SYNM-201ENST00000328642 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
SYNM-201ENST00000328642 RB1CC1Q8TDY2 1594 aa24■■□□□ 1.43
SYNM-201ENST00000328642 NACADO15069 1562 aa23.97■■□□□ 1.43
SYNM-201ENST00000328642 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
SYNM-201ENST00000328642 ARID3CA6NKF2 412 aa23.85■■□□□ 1.41
SYNM-201ENST00000328642 FAM50AQ14320 339 aaKnown RBP23.77■■□□□ 1.4
SYNM-201ENST00000328642 FBLN2P98095 1184 aa23.68■■□□□ 1.38
SYNM-201ENST00000328642 CNGB1Q14028 1251 aaPredicted RBP23.62■■□□□ 1.37
SYNM-201ENST00000328642 WIZO95785 1651 aa23.62■■□□□ 1.37
SYNM-201ENST00000328642 CENPBP07199 599 aaPredicted RBP23.58■■□□□ 1.37
SYNM-201ENST00000328642 SOGA1O94964 1423 aa23.57■■□□□ 1.36
SYNM-201ENST00000328642 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
SYNM-201ENST00000328642 DIEXFQ68CQ4 756 aaKnown RBP23.57■■□□□ 1.36
SYNM-201ENST00000328642 NEUROD1Q13562 356 aa23.56■■□□□ 1.36
SYNM-201ENST00000328642 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
SYNM-201ENST00000328642 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
SYNM-201ENST00000328642 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
SYNM-201ENST00000328642 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
SYNM-201ENST00000328642 POLR3GLQ9BT43 218 aa23.42■■□□□ 1.34
SYNM-201ENST00000328642 CEP162Q5TB80 1403 aa23.4■■□□□ 1.34
SYNM-201ENST00000328642 CLIP1P30622 1438 aa23.32■■□□□ 1.32
SYNM-201ENST00000328642 TRIM52Q96A61 297 aa23.32■■□□□ 1.32
SYNM-201ENST00000328642 MYT1LQ9UL68 1186 aa23.3■■□□□ 1.32
SYNM-201ENST00000328642 RUSC2Q8N2Y8 1516 aa23.24■■□□□ 1.31
SYNM-201ENST00000328642 ZNF316A6NFI3 1004 aaPredicted RBP23.16■■□□□ 1.3
SYNM-201ENST00000328642 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
SYNM-201ENST00000328642 ZNF777Q9ULD5 760 aaPredicted RBP23.15■■□□□ 1.3
SYNM-201ENST00000328642 CHIC2Q9UKJ5 165 aa23.14■■□□□ 1.3
SYNM-201ENST00000328642 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
SYNM-201ENST00000328642 ZNF326Q5BKZ1 582 aaKnown RBP23.1■■□□□ 1.29
SYNM-201ENST00000328642 HIRIP3Q9BW71 556 aaPredicted RBP23.08■■□□□ 1.29
SYNM-201ENST00000328642 SMARCA4P51532 1647 aa23.07■■□□□ 1.28
SYNM-201ENST00000328642 TOP2AP11388 1531 aaKnown RBP23.05■■□□□ 1.28
SYNM-201ENST00000328642 ATAD2BQ9ULI0 1458 aa23.04■■□□□ 1.28
SYNM-201ENST00000328642 EEA1Q15075 1411 aa23■■□□□ 1.27
SYNM-201ENST00000328642 KANK4Q5T7N3 995 aaPredicted RBP22.99■■□□□ 1.27
SYNM-201ENST00000328642 GTF3C3Q9Y5Q9 886 aa22.99■■□□□ 1.27
SYNM-201ENST00000328642 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
SYNM-201ENST00000328642 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
SYNM-201ENST00000328642 PELP1Q8IZL8 1130 aaKnown RBP22.96■■□□□ 1.27
SYNM-201ENST00000328642 CUX2O14529 1486 aa22.93■■□□□ 1.26
SYNM-201ENST00000328642 RRP7BPQ9NSQ0 103 aa22.86■■□□□ 1.25
SYNM-201ENST00000328642 CHMP7Q8WUX9 453 aaPredicted RBP22.86■■□□□ 1.25
SYNM-201ENST00000328642 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
SYNM-201ENST00000328642 SMARCA2P51531 1590 aa22.84■■□□□ 1.25
SYNM-201ENST00000328642 RAPGEF2Q9Y4G8 1499 aa22.83■■□□□ 1.25
SYNM-201ENST00000328642 BCANQ96GW7 911 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 DDX10Q13206 875 aaKnown RBP22.82■■□□□ 1.24
SYNM-201ENST00000328642 MIER1Q8N108 512 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 NEFLP07196 543 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 SIN3AQ96ST3 1273 aa22.77■■□□□ 1.24
SYNM-201ENST00000328642 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
SYNM-201ENST00000328642 ACIN1Q9UKV3 1341 aaKnown RBP22.73■■□□□ 1.23
SYNM-201ENST00000328642 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
SYNM-201ENST00000328642 CDK11AQ9UQ88 783 aaPredicted RBP22.65■■□□□ 1.22
SYNM-201ENST00000328642 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
SYNM-201ENST00000328642 SLC4A1APQ9BWU0 796 aaKnown RBP22.62■■□□□ 1.21
SYNM-201ENST00000328642 KCNH8Q96L42 1107 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.61■■□□□ 1.21
SYNM-201ENST00000328642 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 ANP32CO43423 234 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 SCAF1Q9H7N4 1312 aaKnown RBP22.59■■□□□ 1.21
SYNM-201ENST00000328642 SENP3-EIF4A1A0A087X0R7 540 aa22.58■■□□□ 1.21
SYNM-201ENST00000328642 SENP3Q9H4L4 574 aaPredicted RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms