RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NISCHQ9Y2I1 1504 aa35.26■■■■□ 3.23
COL4A1-204ENST00000543140 CCDC180Q9P1Z9 1646 aa30.27■■■□□ 2.44
COL4A1-204ENST00000543140 ZCCHC6Q5VYS8 1495 aaKnown RBP29.71■■■□□ 2.35
COL4A1-204ENST00000543140 SHROOM4Q9ULL8 1493 aa29.65■■■□□ 2.34
COL4A1-204ENST00000543140 DCAF8L2P0C7V8 631 aa29.38■■■□□ 2.29
COL4A1-204ENST00000543140 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
COL4A1-204ENST00000543140 SUPT5HO00267 1087 aaKnown RBP28.83■■■□□ 2.21
COL4A1-204ENST00000543140 ABCC9O60706 1549 aa28.45■■■□□ 2.14
COL4A1-204ENST00000543140 MYO15BQ96JP2 1530 aa28.3■■■□□ 2.12
COL4A1-204ENST00000543140 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
COL4A1-204ENST00000543140 NACADO15069 1562 aa28.09■■■□□ 2.09
COL4A1-204ENST00000543140 CHIC1Q5VXU3 224 aa27.76■■■□□ 2.03
COL4A1-204ENST00000543140 RB1CC1Q8TDY2 1594 aa27.75■■■□□ 2.03
COL4A1-204ENST00000543140 RSF1Q96T23 1441 aaPredicted RBP27.68■■■□□ 2.02
COL4A1-204ENST00000543140 CECR2Q9BXF3 1484 aa27.52■■■□□ 2
COL4A1-204ENST00000543140 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
COL4A1-204ENST00000543140 UNC13AQ9UPW8 1703 aa27.35■■□□□ 1.97
COL4A1-204ENST00000543140 WIZO95785 1651 aa27.22■■□□□ 1.95
COL4A1-204ENST00000543140 BAZ1AQ9NRL2 1556 aaPredicted RBP27.13■■□□□ 1.93
COL4A1-204ENST00000543140 PABPN1Q86U42 306 aaKnown RBP eCLIP27.09■■□□□ 1.93
COL4A1-204ENST00000543140 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
COL4A1-204ENST00000543140 SMARCA4P51532 1647 aa26.97■■□□□ 1.91
COL4A1-204ENST00000543140 LOC105371045A0A1W2PR82 267 aa26.92■■□□□ 1.9
COL4A1-204ENST00000543140 TRIM41Q8WV44 630 aa26.91■■□□□ 1.9
COL4A1-204ENST00000543140 TOP2AP11388 1531 aaKnown RBP26.78■■□□□ 1.88
COL4A1-204ENST00000543140 FAM9AQ8IZU1 332 aaPredicted RBP26.66■■□□□ 1.86
COL4A1-204ENST00000543140 CCDC88BA6NC98 1476 aa26.65■■□□□ 1.86
COL4A1-204ENST00000543140 SMARCA2P51531 1590 aa26.62■■□□□ 1.85
COL4A1-204ENST00000543140 EIF4G1Q04637 1599 aaKnown RBP26.59■■□□□ 1.85
COL4A1-204ENST00000543140 PEG3Q9GZU2 1588 aa26.48■■□□□ 1.83
COL4A1-204ENST00000543140 EHMT2Q96KQ7 1210 aa26.44■■□□□ 1.82
COL4A1-204ENST00000543140 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
COL4A1-204ENST00000543140 ATAD2BQ9ULI0 1458 aa26.39■■□□□ 1.82
COL4A1-204ENST00000543140 PCGF6Q9BYE7 350 aa26.36■■□□□ 1.81
COL4A1-204ENST00000543140 BAZ1BQ9UIG0 1483 aaKnown RBP26.31■■□□□ 1.8
COL4A1-204ENST00000543140 SOGA1O94964 1423 aa26.04■■□□□ 1.76
COL4A1-204ENST00000543140 WRNQ14191 1432 aaPredicted RBP eCLIP26.03■■□□□ 1.76
COL4A1-204ENST00000543140 TRIM26Q12899 539 aaPredicted RBP25.98■■□□□ 1.75
COL4A1-204ENST00000543140 NCAPD3P42695 1498 aa25.98■■□□□ 1.75
COL4A1-204ENST00000543140 HRCP23327 699 aa25.96■■□□□ 1.75
COL4A1-204ENST00000543140 RUSC2Q8N2Y8 1516 aa25.94■■□□□ 1.74
COL4A1-204ENST00000543140 HMGXB3Q12766 1538 aa25.94■■□□□ 1.74
COL4A1-204ENST00000543140 SYNJ1O43426 1573 aa25.92■■□□□ 1.74
COL4A1-204ENST00000543140 CSRNP3Q8WYN3 585 aa25.85■■□□□ 1.73
COL4A1-204ENST00000543140 EEA1Q15075 1411 aa25.82■■□□□ 1.72
COL4A1-204ENST00000543140 PPARGC1BQ86YN6 1023 aaKnown RBP25.75■■□□□ 1.71
COL4A1-204ENST00000543140 UBTFP17480 764 aaKnown RBP25.72■■□□□ 1.71
COL4A1-204ENST00000543140 CEP162Q5TB80 1403 aa25.67■■□□□ 1.7
COL4A1-204ENST00000543140 TNIKQ9UKE5 1360 aa25.66■■□□□ 1.7
COL4A1-204ENST00000543140 TOP2BQ02880 1626 aa25.66■■□□□ 1.7
COL4A1-204ENST00000543140 CC2D2AQ9P2K1 1620 aa25.64■■□□□ 1.69
COL4A1-204ENST00000543140 GOLGA3Q08378 1498 aa25.62■■□□□ 1.69
COL4A1-204ENST00000543140 CFTRP13569 1480 aa25.62■■□□□ 1.69
COL4A1-204ENST00000543140 BIVM-ERCC5R4GMW8 1640 aa25.58■■□□□ 1.69
COL4A1-204ENST00000543140 CEP164Q9UPV0 1460 aa25.54■■□□□ 1.68
COL4A1-204ENST00000543140 CUX1P39880 1505 aa25.52■■□□□ 1.68
COL4A1-204ENST00000543140 KIF21BO75037 1637 aa25.51■■□□□ 1.67
COL4A1-204ENST00000543140 TTBK1Q5TCY1 1321 aaPredicted RBP25.45■■□□□ 1.66
COL4A1-204ENST00000543140 PRDM2Q13029 1718 aa25.44■■□□□ 1.66
COL4A1-204ENST00000543140 CADPSQ9ULU8 1353 aa25.44■■□□□ 1.66
COL4A1-204ENST00000543140 RAPGEF2Q9Y4G8 1499 aa25.43■■□□□ 1.66
COL4A1-204ENST00000543140 RANGAP1P46060 587 aaPredicted RBP25.35■■□□□ 1.65
COL4A1-204ENST00000543140 CLIP1P30622 1438 aa25.31■■□□□ 1.64
COL4A1-204ENST00000543140 KIF27Q86VH2 1401 aa25.28■■□□□ 1.64
COL4A1-204ENST00000543140 PRXQ9BXM0 1461 aa25.24■■□□□ 1.63
COL4A1-204ENST00000543140 FANCD2Q9BXW9 1451 aa25.2■■□□□ 1.62
COL4A1-204ENST00000543140 ERICH3Q5RHP9 1530 aa25.2■■□□□ 1.62
COL4A1-204ENST00000543140 NESP48681 1621 aa25.19■■□□□ 1.62
COL4A1-204ENST00000543140 FGD5Q6ZNL6 1462 aa25.16■■□□□ 1.62
COL4A1-204ENST00000543140 ZEB1P37275 1124 aaPredicted RBP25.16■■□□□ 1.62
COL4A1-204ENST00000543140 CUX2O14529 1486 aa25.15■■□□□ 1.62
COL4A1-204ENST00000543140 VPS8Q8N3P4 1428 aa25.12■■□□□ 1.61
COL4A1-204ENST00000543140 DNAJC5BQ9UF47 199 aa25.1■■□□□ 1.61
COL4A1-204ENST00000543140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.07■■□□□ 1.6
COL4A1-204ENST00000543140 IGF1RP08069 1367 aa25.04■■□□□ 1.6
COL4A1-204ENST00000543140 APLP2Q06481 763 aa25.02■■□□□ 1.6
COL4A1-204ENST00000543140 DNMBPQ6XZF7 1577 aa25■■□□□ 1.59
COL4A1-204ENST00000543140 TOPBP1Q92547 1522 aa24.98■■□□□ 1.59
COL4A1-204ENST00000543140 CCER1Q8TC90 406 aaPredicted RBP24.97■■□□□ 1.59
COL4A1-204ENST00000543140 LAMC3Q9Y6N6 1575 aa24.97■■□□□ 1.59
COL4A1-204ENST00000543140 RAD54L2Q9Y4B4 1467 aa24.97■■□□□ 1.59
COL4A1-204ENST00000543140 ARAP1Q96P48 1450 aa24.96■■□□□ 1.59
COL4A1-204ENST00000543140 CARMIL1Q5VZK9 1371 aa24.93■■□□□ 1.58
COL4A1-204ENST00000543140 POLA1P09884 1462 aaPredicted RBP24.93■■□□□ 1.58
COL4A1-204ENST00000543140 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
COL4A1-204ENST00000543140 ABCA10Q8WWZ4 1543 aa24.84■■□□□ 1.57
COL4A1-204ENST00000543140 ARHGAP35Q9NRY4 1499 aa24.84■■□□□ 1.57
COL4A1-204ENST00000543140 PDS5BQ9NTI5 1447 aa24.82■■□□□ 1.56
COL4A1-204ENST00000543140 HNRNPUL2Q1KMD3 747 aaKnown RBP24.81■■□□□ 1.56
COL4A1-204ENST00000543140 KIF21AQ7Z4S6 1674 aa24.78■■□□□ 1.56
COL4A1-204ENST00000543140 KANK4Q5T7N3 995 aaPredicted RBP24.76■■□□□ 1.55
COL4A1-204ENST00000543140 TDRD9Q8NDG6 1382 aaKnown RBP24.7■■□□□ 1.54
COL4A1-204ENST00000543140 WDR97A6NE52 1622 aa24.68■■□□□ 1.54
COL4A1-204ENST00000543140 P3H3Q8IVL6 736 aa24.65■■□□□ 1.54
COL4A1-204ENST00000543140 CUL7Q14999 1698 aa24.64■■□□□ 1.54
COL4A1-204ENST00000543140 ABCA5Q8WWZ7 1642 aa24.59■■□□□ 1.53
COL4A1-204ENST00000543140 GAPVD1Q14C86 1478 aa24.59■■□□□ 1.53
COL4A1-204ENST00000543140 CTTNBP2Q8WZ74 1663 aa24.53■■□□□ 1.52
COL4A1-204ENST00000543140 TARBP1Q13395 1621 aaKnown RBP24.52■■□□□ 1.52
COL4A1-204ENST00000543140 FHOD3Q2V2M9 1422 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 899.9 ms