Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.7■■■□□ 2.02
NEK1Q96PY6 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
NEK1Q96PY6 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
NEK1Q96PY6 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
NEK1Q96PY6 HLA-L-211ENST00000482052 1765 ntBASIC27.7■■■□□ 2.02
NEK1Q96PY6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
NEK1Q96PY6 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
NEK1Q96PY6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
NEK1Q96PY6 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC27.69■■■□□ 2.02
NEK1Q96PY6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
NEK1Q96PY6 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.69■■■□□ 2.02
NEK1Q96PY6 AL033527.3-201ENST00000566366 1196 ntBASIC27.69■■■□□ 2.02
NEK1Q96PY6 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.69■■■□□ 2.02
NEK1Q96PY6 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.69■■■□□ 2.02
NEK1Q96PY6 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
NEK1Q96PY6 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
NEK1Q96PY6 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.68■■■□□ 2.02
NEK1Q96PY6 AC090877.2-201ENST00000558441 1738 ntBASIC27.68■■■□□ 2.02
NEK1Q96PY6 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.68■■■□□ 2.02
NEK1Q96PY6 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
NEK1Q96PY6 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.67■■■□□ 2.02
NEK1Q96PY6 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.67■■■□□ 2.02
NEK1Q96PY6 PVT1_1.1-201ENST00000615125 194 ntBASIC27.67■■■□□ 2.02
NEK1Q96PY6 AC074183.2-201ENST00000623112 922 ntBASIC27.67■■■□□ 2.02
NEK1Q96PY6 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.67■■■□□ 2.02
NEK1Q96PY6 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.67■■■□□ 2.02
NEK1Q96PY6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
NEK1Q96PY6 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
NEK1Q96PY6 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
NEK1Q96PY6 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC27.66■■■□□ 2.02
NEK1Q96PY6 LINC00543-201ENST00000567234 1845 ntBASIC27.66■■■□□ 2.02
NEK1Q96PY6 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
NEK1Q96PY6 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
NEK1Q96PY6 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
NEK1Q96PY6 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
NEK1Q96PY6 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
NEK1Q96PY6 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.65■■■□□ 2.02
NEK1Q96PY6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
NEK1Q96PY6 AC010980.1-201ENST00000587192 1142 ntBASIC27.64■■■□□ 2.02
NEK1Q96PY6 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC27.63■■■□□ 2.01
NEK1Q96PY6 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
NEK1Q96PY6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
NEK1Q96PY6 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC27.63■■■□□ 2.01
NEK1Q96PY6 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
NEK1Q96PY6 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
NEK1Q96PY6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
NEK1Q96PY6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NEK1Q96PY6 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC27.62■■■□□ 2.01
NEK1Q96PY6 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NEK1Q96PY6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.62■■■□□ 2.01
NEK1Q96PY6 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC27.62■■■□□ 2.01
NEK1Q96PY6 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
NEK1Q96PY6 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NEK1Q96PY6 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC27.62■■■□□ 2.01
NEK1Q96PY6 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC27.61■■■□□ 2.01
NEK1Q96PY6 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC27.61■■■□□ 2.01
NEK1Q96PY6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC27.61■■■□□ 2.01
NEK1Q96PY6 AC022616.5-201ENST00000518796 181 ntBASIC27.61■■■□□ 2.01
NEK1Q96PY6 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.6■■■□□ 2.01
NEK1Q96PY6 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NEK1Q96PY6 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
NEK1Q96PY6 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC27.6■■■□□ 2.01
NEK1Q96PY6 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
NEK1Q96PY6 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NEK1Q96PY6 AC141586.4-201ENST00000624558 1573 ntBASIC27.6■■■□□ 2.01
NEK1Q96PY6 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
NEK1Q96PY6 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.59■■■□□ 2.01
NEK1Q96PY6 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.59■■■□□ 2.01
NEK1Q96PY6 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.59■■■□□ 2.01
NEK1Q96PY6 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.59■■■□□ 2.01
NEK1Q96PY6 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
NEK1Q96PY6 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
NEK1Q96PY6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
NEK1Q96PY6 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC27.58■■■□□ 2.01
NEK1Q96PY6 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
NEK1Q96PY6 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
NEK1Q96PY6 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
NEK1Q96PY6 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.58■■■□□ 2
NEK1Q96PY6 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.57■■■□□ 2
NEK1Q96PY6 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NEK1Q96PY6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms