Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USF1P22415 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.72■□□□□ 0.75
USF1P22415 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 AC131281.2-201ENST00000520478 145 ntBASIC19.72■□□□□ 0.75
USF1P22415 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USF1P22415 AC092803.2-201ENST00000564287 1899 ntBASIC19.72■□□□□ 0.75
USF1P22415 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.72■□□□□ 0.75
USF1P22415 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USF1P22415 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USF1P22415 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USF1P22415 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.71■□□□□ 0.75
USF1P22415 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USF1P22415 AL136116.3-201ENST00000402907 1138 ntBASIC19.71■□□□□ 0.75
USF1P22415 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
USF1P22415 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.71■□□□□ 0.75
USF1P22415 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.71■□□□□ 0.75
USF1P22415 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.71■□□□□ 0.75
USF1P22415 AL356740.2-201ENST00000601559 647 ntBASIC19.71■□□□□ 0.75
USF1P22415 AL139246.5-201ENST00000606645 996 ntBASIC19.71■□□□□ 0.75
USF1P22415 AL117332.1-201ENST00000622628 974 ntBASIC19.71■□□□□ 0.75
USF1P22415 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
USF1P22415 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USF1P22415 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USF1P22415 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USF1P22415 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USF1P22415 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.7■□□□□ 0.74
USF1P22415 MIR638-201ENST00000385237 100 ntBASIC19.7■□□□□ 0.74
USF1P22415 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.7■□□□□ 0.74
USF1P22415 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.7■□□□□ 0.74
USF1P22415 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USF1P22415 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.7■□□□□ 0.74
USF1P22415 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.69■□□□□ 0.74
USF1P22415 MIR3621-201ENST00000580529 85 ntBASIC19.69■□□□□ 0.74
USF1P22415 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USF1P22415 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USF1P22415 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USF1P22415 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.68■□□□□ 0.74
USF1P22415 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USF1P22415 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.68■□□□□ 0.74
USF1P22415 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.68■□□□□ 0.74
USF1P22415 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF1P22415 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.68■□□□□ 0.74
USF1P22415 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF1P22415 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USF1P22415 DUSP8P4-201ENST00000399538 1761 ntBASIC19.67■□□□□ 0.74
USF1P22415 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.67■□□□□ 0.74
USF1P22415 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.67■□□□□ 0.74
USF1P22415 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.67■□□□□ 0.74
USF1P22415 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USF1P22415 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USF1P22415 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.66■□□□□ 0.74
USF1P22415 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.66■□□□□ 0.74
USF1P22415 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USF1P22415 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USF1P22415 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USF1P22415 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.66■□□□□ 0.74
USF1P22415 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.66■□□□□ 0.74
USF1P22415 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USF1P22415 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
USF1P22415 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
USF1P22415 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USF1P22415 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.65■□□□□ 0.74
USF1P22415 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.65■□□□□ 0.74
USF1P22415 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USF1P22415 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
USF1P22415 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
USF1P22415 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF1P22415 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.64■□□□□ 0.73
USF1P22415 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USF1P22415 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USF1P22415 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USF1P22415 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.63■□□□□ 0.73
USF1P22415 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.63■□□□□ 0.73
USF1P22415 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.63■□□□□ 0.73
USF1P22415 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.63■□□□□ 0.73
USF1P22415 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USF1P22415 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
USF1P22415 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF1P22415 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USF1P22415 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms