Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.58■□□□□ 0.08
MKS1Q9NXB0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MKS1Q9NXB0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 AC004870.1-201ENST00000315132 882 ntBASIC15.57■□□□□ 0.08
MKS1Q9NXB0 MIR346-201ENST00000362234 95 ntBASIC15.57■□□□□ 0.08
MKS1Q9NXB0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.57■□□□□ 0.08
MKS1Q9NXB0 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 KRT18P56-201ENST00000507275 550 ntBASIC15.57■□□□□ 0.08
MKS1Q9NXB0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MKS1Q9NXB0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 MRPL3P1-201ENST00000400109 1033 ntBASIC15.56■□□□□ 0.08
MKS1Q9NXB0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 AZGP1P1-201ENST00000411909 902 ntBASIC15.56■□□□□ 0.08
MKS1Q9NXB0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
MKS1Q9NXB0 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MKS1Q9NXB0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms