Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.21■□□□□ 0.03
VMP1Q96GC9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.21■□□□□ 0.03
VMP1Q96GC9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 AC010491.1-201ENST00000563101 2797 ntBASIC15.21■□□□□ 0.03
VMP1Q96GC9 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 RNA5SP410-201ENST00000516285 106 ntBASIC15.21■□□□□ 0.03
VMP1Q96GC9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 AC024267.1-201ENST00000582320 895 ntBASIC15.21■□□□□ 0.03
VMP1Q96GC9 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VMP1Q96GC9 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.21■□□□□ 0.03
VMP1Q96GC9 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VMP1Q96GC9 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.21■□□□□ 0.02
VMP1Q96GC9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VMP1Q96GC9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VMP1Q96GC9 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.21■□□□□ 0.02
VMP1Q96GC9 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.21■□□□□ 0.02
VMP1Q96GC9 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 U82695.1-201ENST00000635752 1889 ntBASIC15.2■□□□□ 0.02
VMP1Q96GC9 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 AC005622.1-201ENST00000636801 1703 ntBASIC15.2■□□□□ 0.02
VMP1Q96GC9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 CYMP-203ENST00000474680 1263 ntBASIC15.2■□□□□ 0.02
VMP1Q96GC9 AC018529.1-201ENST00000613063 361 ntBASIC15.2■□□□□ 0.02
VMP1Q96GC9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 AL589702.1-201ENST00000641229 1509 ntBASIC15.2■□□□□ 0.02
VMP1Q96GC9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms