RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 NISCHQ9Y2I1 1504 aa40.26■■■■■ 4.04
LSM1-201ENST00000311351 CCDC180Q9P1Z9 1646 aa35.97■■■■□ 3.35
LSM1-201ENST00000311351 ABCC9O60706 1549 aa35.47■■■■□ 3.27
LSM1-201ENST00000311351 RB1CC1Q8TDY2 1594 aa33.96■■■■□ 3.03
LSM1-201ENST00000311351 NACADO15069 1562 aa33.82■■■■□ 3
LSM1-201ENST00000311351 DCAF8L2P0C7V8 631 aa33.7■■■□□ 2.99
LSM1-201ENST00000311351 ZCCHC6Q5VYS8 1495 aaKnown RBP33.51■■■□□ 2.96
LSM1-201ENST00000311351 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
LSM1-201ENST00000311351 UNC13AQ9UPW8 1703 aa33.31■■■□□ 2.92
LSM1-201ENST00000311351 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
LSM1-201ENST00000311351 PABPN1Q86U42 306 aaKnown RBP eCLIP33.05■■■□□ 2.88
LSM1-201ENST00000311351 BICRAQ9NZM4 1560 aa33■■■□□ 2.87
LSM1-201ENST00000311351 SCRIBQ14160 1630 aa32.84■■■□□ 2.85
LSM1-201ENST00000311351 DNAJC5BQ9UF47 199 aa32.77■■■□□ 2.84
LSM1-201ENST00000311351 SHROOM4Q9ULL8 1493 aa32.53■■■□□ 2.8
LSM1-201ENST00000311351 EIF4G1Q04637 1599 aaKnown RBP32.12■■■□□ 2.73
LSM1-201ENST00000311351 CC2D2AQ9P2K1 1620 aa32.08■■■□□ 2.73
LSM1-201ENST00000311351 CECR2Q9BXF3 1484 aa31.87■■■□□ 2.69
LSM1-201ENST00000311351 SMARCA4P51532 1647 aa31.35■■■□□ 2.61
LSM1-201ENST00000311351 BAZ1AQ9NRL2 1556 aaPredicted RBP31.23■■■□□ 2.59
LSM1-201ENST00000311351 ATAD2BQ9ULI0 1458 aa31.2■■■□□ 2.58
LSM1-201ENST00000311351 NCAPD3P42695 1498 aa31.19■■■□□ 2.58
LSM1-201ENST00000311351 SMARCA2P51531 1590 aa31.15■■■□□ 2.58
LSM1-201ENST00000311351 MROH2BQ7Z745 1585 aa31.07■■■□□ 2.56
LSM1-201ENST00000311351 HMGXB3Q12766 1538 aa31.07■■■□□ 2.56
LSM1-201ENST00000311351 PEG3Q9GZU2 1588 aa31■■■□□ 2.55
LSM1-201ENST00000311351 BAZ1BQ9UIG0 1483 aaKnown RBP30.94■■■□□ 2.54
LSM1-201ENST00000311351 WIZO95785 1651 aa30.74■■■□□ 2.51
LSM1-201ENST00000311351 NESP48681 1621 aa30.63■■■□□ 2.49
LSM1-201ENST00000311351 AEBP2Q6ZN18 517 aaPredicted RBP30.6■■■□□ 2.49
LSM1-201ENST00000311351 ERCC6Q03468 1493 aa30.57■■■□□ 2.48
LSM1-201ENST00000311351 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
LSM1-201ENST00000311351 LAMC3Q9Y6N6 1575 aa30.45■■■□□ 2.47
LSM1-201ENST00000311351 TOP2AP11388 1531 aaKnown RBP30.37■■■□□ 2.45
LSM1-201ENST00000311351 CUX2O14529 1486 aa30.32■■■□□ 2.44
LSM1-201ENST00000311351 KIF21AQ7Z4S6 1674 aa30.3■■■□□ 2.44
LSM1-201ENST00000311351 CADPSQ9ULU8 1353 aa30.26■■■□□ 2.43
LSM1-201ENST00000311351 THOC2Q8NI27 1593 aaKnown RBP30.25■■■□□ 2.43
LSM1-201ENST00000311351 PDS5BQ9NTI5 1447 aa30.21■■■□□ 2.43
LSM1-201ENST00000311351 CFTRP13569 1480 aa30.05■■■□□ 2.4
LSM1-201ENST00000311351 CCDC88BA6NC98 1476 aa29.98■■■□□ 2.39
LSM1-201ENST00000311351 MRC2Q9UBG0 1479 aa29.98■■■□□ 2.39
LSM1-201ENST00000311351 FANCD2Q9BXW9 1451 aa29.97■■■□□ 2.39
LSM1-201ENST00000311351 CEP164Q9UPV0 1460 aa29.96■■■□□ 2.39
LSM1-201ENST00000311351 PRDM2Q13029 1718 aa29.91■■■□□ 2.38
LSM1-201ENST00000311351 WDR62O43379 1518 aa29.91■■■□□ 2.38
LSM1-201ENST00000311351 URB2Q14146 1524 aaKnown RBP29.71■■■□□ 2.35
LSM1-201ENST00000311351 DNAJC5Q9H3Z4 198 aa29.66■■■□□ 2.34
LSM1-201ENST00000311351 SUPT5HO00267 1087 aaKnown RBP29.55■■■□□ 2.32
LSM1-201ENST00000311351 TOPBP1Q92547 1522 aa29.47■■■□□ 2.31
LSM1-201ENST00000311351 DNMBPQ6XZF7 1577 aa29.42■■■□□ 2.3
LSM1-201ENST00000311351 ABCC8Q09428 1581 aa29.36■■■□□ 2.29
LSM1-201ENST00000311351 IFT140Q96RY7 1462 aa29.32■■■□□ 2.28
LSM1-201ENST00000311351 ZNF608Q9ULD9 1512 aaPredicted RBP29.27■■■□□ 2.28
LSM1-201ENST00000311351 POLA1P09884 1462 aaPredicted RBP29.21■■■□□ 2.27
LSM1-201ENST00000311351 TARBP1Q13395 1621 aaKnown RBP29.2■■■□□ 2.26
LSM1-201ENST00000311351 EIF4G3O43432 1585 aaKnown RBP29.18■■■□□ 2.26
LSM1-201ENST00000311351 CUX1P39880 1505 aa29.16■■■□□ 2.26
LSM1-201ENST00000311351 FGD5Q6ZNL6 1462 aa29.1■■■□□ 2.25
LSM1-201ENST00000311351 RAD54L2Q9Y4B4 1467 aa29.09■■■□□ 2.25
LSM1-201ENST00000311351 AQRO60306 1485 aaKnown RBP eCLIP29.04■■■□□ 2.246e-7■■■□□ 15.2
LSM1-201ENST00000311351 SOGA1O94964 1423 aa29.02■■■□□ 2.24
LSM1-201ENST00000311351 WDR97A6NE52 1622 aa28.94■■■□□ 2.22
LSM1-201ENST00000311351 OSCARQ8IYS5 282 aa28.93■■■□□ 2.22
LSM1-201ENST00000311351 TDRD9Q8NDG6 1382 aaKnown RBP28.92■■■□□ 2.22
LSM1-201ENST00000311351 CHD1O14646 1710 aa28.89■■■□□ 2.22
LSM1-201ENST00000311351 BIVM-ERCC5R4GMW8 1640 aa28.85■■■□□ 2.21
LSM1-201ENST00000311351 SYNJ1O43426 1573 aa28.84■■■□□ 2.21
LSM1-201ENST00000311351 TOP2BQ02880 1626 aa28.83■■■□□ 2.21
LSM1-201ENST00000311351 WRNQ14191 1432 aaPredicted RBP eCLIP28.82■■■□□ 2.2
LSM1-201ENST00000311351 SNAPC4Q5SXM2 1469 aa28.79■■■□□ 2.2
LSM1-201ENST00000311351 ABCA10Q8WWZ4 1543 aa28.77■■■□□ 2.2
LSM1-201ENST00000311351 PBRM1Q86U86 1689 aa28.77■■■□□ 2.2
LSM1-201ENST00000311351 ABCA5Q8WWZ7 1642 aa28.75■■■□□ 2.19
LSM1-201ENST00000311351 GRIN2BQ13224 1484 aa28.74■■■□□ 2.19
LSM1-201ENST00000311351 GAPVD1Q14C86 1478 aa28.71■■■□□ 2.19
LSM1-201ENST00000311351 FBLN2P98095 1184 aa28.7■■■□□ 2.18
LSM1-201ENST00000311351 MAGI1Q96QZ7 1491 aaPredicted RBP28.7■■■□□ 2.18
LSM1-201ENST00000311351 RIMBP3CA6NJZ7 1639 aa28.66■■■□□ 2.18
LSM1-201ENST00000311351 RIMBP3BA6NNM3 1639 aa28.66■■■□□ 2.18
LSM1-201ENST00000311351 RIMBP3Q9UFD9 1639 aa28.66■■■□□ 2.18
LSM1-201ENST00000311351 TRIM41Q8WV44 630 aa28.63■■■□□ 2.17
LSM1-201ENST00000311351 ARHGEF11O15085 1522 aa28.59■■■□□ 2.17
LSM1-201ENST00000311351 SYNJ2O15056 1496 aa28.59■■■□□ 2.17
LSM1-201ENST00000311351 CHMP7Q8WUX9 453 aaPredicted RBP28.54■■■□□ 2.16
LSM1-201ENST00000311351 CLASP1Q7Z460 1538 aa28.52■■■□□ 2.16
LSM1-201ENST00000311351 ADAMTS12P58397 1594 aa28.5■■■□□ 2.15
LSM1-201ENST00000311351 CHIC1Q5VXU3 224 aa28.46■■■□□ 2.15
LSM1-201ENST00000311351 ERICH3Q5RHP9 1530 aa28.41■■■□□ 2.14
LSM1-201ENST00000311351 GRIN2AQ12879 1464 aa28.4■■■□□ 2.14
LSM1-201ENST00000311351 ARAP1Q96P48 1450 aa28.36■■■□□ 2.13
LSM1-201ENST00000311351 FHAD1B1AJZ9 1412 aa28.35■■■□□ 2.13
LSM1-201ENST00000311351 CEP170Q5SW79 1584 aa28.32■■■□□ 2.12
LSM1-201ENST00000311351 NUP160Q12769 1436 aa28.26■■■□□ 2.12
LSM1-201ENST00000311351 CYB5RLQ6IPT4 315 aa28.26■■■□□ 2.11
LSM1-201ENST00000311351 KIF27Q86VH2 1401 aa28.21■■■□□ 2.11
LSM1-201ENST00000311351 CUL7Q14999 1698 aa28.14■■■□□ 2.1
LSM1-201ENST00000311351 ERCC6L2Q5T890 1561 aa28.14■■■□□ 2.1
LSM1-201ENST00000311351 SHROOM2Q13796 1616 aa28.14■■■□□ 2.09
LSM1-201ENST00000311351 IGF1RP08069 1367 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms