Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
MSH3P20585 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
MSH3P20585 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 AC011477.6-201ENST00000604980 1927 ntBASIC15.84■□□□□ 0.13
MSH3P20585 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.84■□□□□ 0.13
MSH3P20585 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
MSH3P20585 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 RPL37AP1-201ENST00000412502 279 ntBASIC15.84■□□□□ 0.13
MSH3P20585 SERBP1P3-201ENST00000459980 809 ntBASIC15.84■□□□□ 0.13
MSH3P20585 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 CYMP-203ENST00000474680 1263 ntBASIC15.84■□□□□ 0.13
MSH3P20585 AC097493.3-201ENST00000509725 367 ntBASIC15.84■□□□□ 0.13
MSH3P20585 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.84■□□□□ 0.13
MSH3P20585 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.84■□□□□ 0.13
MSH3P20585 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.84■□□□□ 0.13
MSH3P20585 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.84■□□□□ 0.13
MSH3P20585 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 KRT8P12-202ENST00000472924 1397 ntBASIC15.84■□□□□ 0.13
MSH3P20585 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
MSH3P20585 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
MSH3P20585 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 LINC00554-201ENST00000564841 3011 ntBASIC15.84■□□□□ 0.13
MSH3P20585 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
MSH3P20585 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSH3P20585 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.83■□□□□ 0.13
MSH3P20585 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.83■□□□□ 0.13
MSH3P20585 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.83■□□□□ 0.12
MSH3P20585 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.83■□□□□ 0.12
MSH3P20585 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.83■□□□□ 0.12
MSH3P20585 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.83■□□□□ 0.12
MSH3P20585 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.83■□□□□ 0.12
MSH3P20585 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.83■□□□□ 0.12
MSH3P20585 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
MSH3P20585 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSH3P20585 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSH3P20585 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.83■□□□□ 0.12
MSH3P20585 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSH3P20585 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 REXO1L1P-202ENST00000608646 1974 ntBASIC15.82■□□□□ 0.12
MSH3P20585 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms