Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.83■■■■□ 3.01
MSH3P20585 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
MSH3P20585 AL356512.1-201ENST00000607453 1739 ntBASIC32.93■■■□□ 2.86
MSH3P20585 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.92■■■□□ 2.86
MSH3P20585 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
MSH3P20585 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
MSH3P20585 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.47■■■□□ 2.79
MSH3P20585 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.41■■■□□ 2.78
MSH3P20585 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.12■■■□□ 2.73
MSH3P20585 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.05■■■□□ 2.72
MSH3P20585 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.9■■■□□ 2.7
MSH3P20585 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.88■■■□□ 2.69
MSH3P20585 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC31.83■■■□□ 2.69
MSH3P20585 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
MSH3P20585 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
MSH3P20585 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.35■■■□□ 2.61
MSH3P20585 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
MSH3P20585 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
MSH3P20585 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
MSH3P20585 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.17■■■□□ 2.58
MSH3P20585 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH3P20585 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.03■■■□□ 2.56
MSH3P20585 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
MSH3P20585 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH3P20585 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
MSH3P20585 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH3P20585 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.65■■■□□ 2.5
MSH3P20585 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
MSH3P20585 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH3P20585 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.55■■■□□ 2.48
MSH3P20585 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
MSH3P20585 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
MSH3P20585 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
MSH3P20585 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
MSH3P20585 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
MSH3P20585 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
MSH3P20585 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
MSH3P20585 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.22■■■□□ 2.43
MSH3P20585 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
MSH3P20585 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH3P20585 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
MSH3P20585 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.18■■■□□ 2.42
MSH3P20585 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
MSH3P20585 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.13■■■□□ 2.41
MSH3P20585 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.07■■■□□ 2.4
MSH3P20585 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
MSH3P20585 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
MSH3P20585 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30■■■□□ 2.39
MSH3P20585 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30■■■□□ 2.39
MSH3P20585 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
MSH3P20585 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
MSH3P20585 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH3P20585 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH3P20585 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
MSH3P20585 AC015813.7-201ENST00000623294 581 ntBASIC29.68■■■□□ 2.34
MSH3P20585 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.66■■■□□ 2.34
MSH3P20585 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
MSH3P20585 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.53■■■□□ 2.32
MSH3P20585 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.46■■■□□ 2.31
MSH3P20585 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
MSH3P20585 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.45■■■□□ 2.3
MSH3P20585 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.42■■■□□ 2.3
MSH3P20585 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH3P20585 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH3P20585 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.38■■■□□ 2.29
MSH3P20585 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
MSH3P20585 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH3P20585 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH3P20585 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
MSH3P20585 AC006077.2-201ENST00000623591 457 ntBASIC29.22■■■□□ 2.27
MSH3P20585 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
MSH3P20585 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH3P20585 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
MSH3P20585 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH3P20585 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.15■■■□□ 2.26
MSH3P20585 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH3P20585 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH3P20585 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
MSH3P20585 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
MSH3P20585 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
MSH3P20585 ZNRF2P1-201ENST00000441407 443 ntBASIC29.07■■■□□ 2.24
MSH3P20585 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
MSH3P20585 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.99■■■□□ 2.23
MSH3P20585 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
MSH3P20585 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
MSH3P20585 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH3P20585 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH3P20585 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
MSH3P20585 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
MSH3P20585 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
MSH3P20585 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
MSH3P20585 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
MSH3P20585 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC28.69■■■□□ 2.18
MSH3P20585 AC145285.7-201ENST00000614819 1539 ntBASIC28.69■■■□□ 2.18
MSH3P20585 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
MSH3P20585 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC28.66■■■□□ 2.18
MSH3P20585 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
MSH3P20585 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
MSH3P20585 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
MSH3P20585 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms