Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ECHDC1Q9NTX5 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
ECHDC1Q9NTX5 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.2
ECHDC1Q9NTX5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
ECHDC1Q9NTX5 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.76■■■□□ 2.19
ECHDC1Q9NTX5 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
ECHDC1Q9NTX5 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ECHDC1Q9NTX5 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
ECHDC1Q9NTX5 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ECHDC1Q9NTX5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 MIR6089-201ENST00000616698 64 ntBASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
ECHDC1Q9NTX5 AC022616.5-201ENST00000518796 181 ntBASIC28.74■■■□□ 2.19
ECHDC1Q9NTX5 AC103834.1-201ENST00000520383 144 ntBASIC28.74■■■□□ 2.19
ECHDC1Q9NTX5 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.74■■■□□ 2.19
ECHDC1Q9NTX5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
ECHDC1Q9NTX5 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28.73■■■□□ 2.19
ECHDC1Q9NTX5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC28.73■■■□□ 2.19
ECHDC1Q9NTX5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
ECHDC1Q9NTX5 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 MIR4508-201ENST00000584178 70 ntBASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
ECHDC1Q9NTX5 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
ECHDC1Q9NTX5 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
ECHDC1Q9NTX5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC28.71■■■□□ 2.19
ECHDC1Q9NTX5 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
ECHDC1Q9NTX5 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.7■■■□□ 2.18
ECHDC1Q9NTX5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 KRT8P33-201ENST00000508125 1423 ntBASIC28.69■■■□□ 2.18
ECHDC1Q9NTX5 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
ECHDC1Q9NTX5 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC28.68■■■□□ 2.18
ECHDC1Q9NTX5 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.68■■■□□ 2.18
ECHDC1Q9NTX5 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 AP003733.4-201ENST00000623785 1697 ntBASIC28.67■■■□□ 2.18
ECHDC1Q9NTX5 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 AC090877.2-201ENST00000558441 1738 ntBASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.66■■■□□ 2.18
ECHDC1Q9NTX5 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ECHDC1Q9NTX5 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ECHDC1Q9NTX5 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
ECHDC1Q9NTX5 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
ECHDC1Q9NTX5 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ECHDC1Q9NTX5 YBX1P4-201ENST00000392794 808 ntBASIC28.62■■■□□ 2.17
ECHDC1Q9NTX5 AC011551.1-201ENST00000614101 683 ntBASIC28.62■■■□□ 2.17
ECHDC1Q9NTX5 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ECHDC1Q9NTX5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
ECHDC1Q9NTX5 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
ECHDC1Q9NTX5 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 KRT18P24-201ENST00000344739 1156 ntBASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 AC120024.1-201ENST00000562672 995 ntBASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.6■■■□□ 2.17
ECHDC1Q9NTX5 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
ECHDC1Q9NTX5 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
ECHDC1Q9NTX5 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms