Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.31■■■□□ 2.6
MSH5O43196 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
MSH5O43196 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
MSH5O43196 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
MSH5O43196 LINC01003-201ENST00000564834 1764 ntBASIC31.3■■■□□ 2.6
MSH5O43196 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH5O43196 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
MSH5O43196 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
MSH5O43196 RPS2P7-201ENST00000447334 885 ntBASIC31.3■■■□□ 2.6
MSH5O43196 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31.3■■■□□ 2.6
MSH5O43196 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC31.3■■■□□ 2.6
MSH5O43196 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
MSH5O43196 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH5O43196 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
MSH5O43196 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
MSH5O43196 AC145676.1-201ENST00000514988 2004 ntBASIC31.29■■■□□ 2.6
MSH5O43196 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
MSH5O43196 TSPY9P-201ENST00000440215 945 ntBASIC31.29■■■□□ 2.6
MSH5O43196 TSPY11P-201ENST00000442607 1045 ntBASIC31.29■■■□□ 2.6
MSH5O43196 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.29■■■□□ 2.6
MSH5O43196 AL139246.5-201ENST00000606645 996 ntBASIC31.29■■■□□ 2.6
MSH5O43196 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
MSH5O43196 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC31.28■■■□□ 2.6
MSH5O43196 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
MSH5O43196 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.28■■■□□ 2.6
MSH5O43196 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
MSH5O43196 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
MSH5O43196 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.27■■■□□ 2.6
MSH5O43196 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
MSH5O43196 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
MSH5O43196 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
MSH5O43196 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
MSH5O43196 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.27■■■□□ 2.6
MSH5O43196 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC31.27■■■□□ 2.6
MSH5O43196 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC31.27■■■□□ 2.6
MSH5O43196 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
MSH5O43196 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC31.27■■■□□ 2.6
MSH5O43196 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
MSH5O43196 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC31.26■■■□□ 2.6
MSH5O43196 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC31.26■■■□□ 2.59
MSH5O43196 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
MSH5O43196 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.26■■■□□ 2.59
MSH5O43196 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
MSH5O43196 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
MSH5O43196 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MSH5O43196 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
MSH5O43196 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
MSH5O43196 TRIR-202ENST00000588213 841 ntTSL 3 BASIC31.24■■■□□ 2.59
MSH5O43196 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
MSH5O43196 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
MSH5O43196 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC31.23■■■□□ 2.59
MSH5O43196 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.23■■■□□ 2.59
MSH5O43196 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
MSH5O43196 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
MSH5O43196 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
MSH5O43196 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.22■■■□□ 2.59
MSH5O43196 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
MSH5O43196 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.22■■■□□ 2.59
MSH5O43196 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
MSH5O43196 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
MSH5O43196 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
MSH5O43196 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
MSH5O43196 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC31.2■■■□□ 2.59
MSH5O43196 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MSH5O43196 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MSH5O43196 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
MSH5O43196 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
MSH5O43196 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
MSH5O43196 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC31.2■■■□□ 2.58
MSH5O43196 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.19■■■□□ 2.58
MSH5O43196 MTATP6P19-201ENST00000413797 659 ntBASIC31.19■■■□□ 2.58
MSH5O43196 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.19■■■□□ 2.58
MSH5O43196 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.19■■■□□ 2.58
MSH5O43196 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.19■■■□□ 2.58
MSH5O43196 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
MSH5O43196 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH5O43196 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
MSH5O43196 MTND4LP12-201ENST00000448237 295 ntBASIC31.18■■■□□ 2.58
MSH5O43196 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
MSH5O43196 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
MSH5O43196 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH5O43196 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH5O43196 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH5O43196 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC31.17■■■□□ 2.58
MSH5O43196 RN7SL718P-201ENST00000581254 303 ntBASIC31.17■■■□□ 2.58
MSH5O43196 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.17■■■□□ 2.58
MSH5O43196 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
MSH5O43196 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.16■■■□□ 2.58
MSH5O43196 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
MSH5O43196 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
MSH5O43196 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
MSH5O43196 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
MSH5O43196 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC31.16■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms