Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL28A1Q2UY09 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.11■■■□□ 2.09
COL28A1Q2UY09 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.11■■■□□ 2.09
COL28A1Q2UY09 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
COL28A1Q2UY09 RPS2P35-201ENST00000443417 897 ntBASIC28.09■■■□□ 2.09
COL28A1Q2UY09 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.09■■■□□ 2.09
COL28A1Q2UY09 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL28A1Q2UY09 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.07■■■□□ 2.08
COL28A1Q2UY09 AL031258.1-201ENST00000623562 325 ntBASIC28.06■■■□□ 2.08
COL28A1Q2UY09 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL28A1Q2UY09 RARRES2P7-201ENST00000567349 469 ntBASIC28.05■■■□□ 2.08
COL28A1Q2UY09 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC27.99■■■□□ 2.07
COL28A1Q2UY09 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL28A1Q2UY09 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL28A1Q2UY09 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL28A1Q2UY09 AC097358.2-201ENST00000607541 1159 ntBASIC27.92■■■□□ 2.06
COL28A1Q2UY09 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
COL28A1Q2UY09 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.88■■■□□ 2.05
COL28A1Q2UY09 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
COL28A1Q2UY09 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL28A1Q2UY09 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL28A1Q2UY09 SUZ12P1-203ENST00000578195 985 ntBASIC27.76■■■□□ 2.03
COL28A1Q2UY09 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
COL28A1Q2UY09 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.75■■■□□ 2.03
COL28A1Q2UY09 AC136428.2-201ENST00000563187 214 ntBASIC27.74■■■□□ 2.03
COL28A1Q2UY09 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC27.71■■■□□ 2.03
COL28A1Q2UY09 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.7■■■□□ 2.02
COL28A1Q2UY09 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL28A1Q2UY09 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC27.67■■■□□ 2.02
COL28A1Q2UY09 SETD8P1-201ENST00000623146 1180 ntBASIC27.65■■■□□ 2.02
COL28A1Q2UY09 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
COL28A1Q2UY09 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC27.63■■■□□ 2.01
COL28A1Q2UY09 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
COL28A1Q2UY09 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
COL28A1Q2UY09 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
COL28A1Q2UY09 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.57■■■□□ 2
COL28A1Q2UY09 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC27.56■■■□□ 2
COL28A1Q2UY09 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.56■■■□□ 2
COL28A1Q2UY09 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL28A1Q2UY09 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.55■■■□□ 2
COL28A1Q2UY09 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.51■■□□□ 1.99
COL28A1Q2UY09 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL28A1Q2UY09 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL28A1Q2UY09 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.49■■□□□ 1.99
COL28A1Q2UY09 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL28A1Q2UY09 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
COL28A1Q2UY09 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL28A1Q2UY09 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC27.44■■□□□ 1.98
COL28A1Q2UY09 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
COL28A1Q2UY09 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC27.42■■□□□ 1.98
COL28A1Q2UY09 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
COL28A1Q2UY09 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
COL28A1Q2UY09 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.41■■□□□ 1.98
COL28A1Q2UY09 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
COL28A1Q2UY09 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.38■■□□□ 1.97
COL28A1Q2UY09 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.38■■□□□ 1.97
COL28A1Q2UY09 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
COL28A1Q2UY09 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL28A1Q2UY09 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC27.36■■□□□ 1.97
COL28A1Q2UY09 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
COL28A1Q2UY09 AL162393.1-201ENST00000437852 946 ntBASIC27.34■■□□□ 1.97
COL28A1Q2UY09 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC27.34■■□□□ 1.97
COL28A1Q2UY09 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL28A1Q2UY09 MIR7108-201ENST00000614319 87 ntBASIC27.3■■□□□ 1.96
COL28A1Q2UY09 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL28A1Q2UY09 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.29■■□□□ 1.96
COL28A1Q2UY09 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.28■■□□□ 1.96
COL28A1Q2UY09 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL28A1Q2UY09 EBPL-203ENST00000378270 579 ntTSL 2 BASIC27.23■■□□□ 1.95
COL28A1Q2UY09 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL28A1Q2UY09 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL28A1Q2UY09 NRG1-221ENST00000614767 762 ntTSL 5 BASIC27.21■■□□□ 1.95
COL28A1Q2UY09 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.2■■□□□ 1.94
COL28A1Q2UY09 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC27.19■■□□□ 1.94
COL28A1Q2UY09 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
COL28A1Q2UY09 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL28A1Q2UY09 ABHD17AP4-201ENST00000411545 909 ntBASIC27.17■■□□□ 1.94
COL28A1Q2UY09 AP006261.1-201ENST00000584783 668 ntBASIC27.17■■□□□ 1.94
COL28A1Q2UY09 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.16■■□□□ 1.94
COL28A1Q2UY09 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL28A1Q2UY09 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
COL28A1Q2UY09 HLA-V-202ENST00000446817 847 ntBASIC27.11■■□□□ 1.93
COL28A1Q2UY09 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.11■■□□□ 1.93
COL28A1Q2UY09 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
COL28A1Q2UY09 CAHM-201ENST00000604200 896 ntBASIC27.06■■□□□ 1.92
COL28A1Q2UY09 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL28A1Q2UY09 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL28A1Q2UY09 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.02■■□□□ 1.92
COL28A1Q2UY09 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
COL28A1Q2UY09 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.01■■□□□ 1.91
COL28A1Q2UY09 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
COL28A1Q2UY09 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL28A1Q2UY09 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
COL28A1Q2UY09 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.98■■□□□ 1.91
COL28A1Q2UY09 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL28A1Q2UY09 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
COL28A1Q2UY09 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.96■■□□□ 1.91
COL28A1Q2UY09 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
COL28A1Q2UY09 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.94■■□□□ 1.9
COL28A1Q2UY09 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms