Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
ABCA4P78363 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.36■■□□□ 1.65
ABCA4P78363 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC25.32■■□□□ 1.64
ABCA4P78363 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA4P78363 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.28■■□□□ 1.64
ABCA4P78363 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.26■■□□□ 1.63
ABCA4P78363 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
ABCA4P78363 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ABCA4P78363 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.24■■□□□ 1.63
ABCA4P78363 AL031258.1-201ENST00000623562 325 ntBASIC25.23■■□□□ 1.63
ABCA4P78363 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.19■■□□□ 1.62
ABCA4P78363 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.19■■□□□ 1.62
ABCA4P78363 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
ABCA4P78363 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
ABCA4P78363 RARRES2P7-201ENST00000567349 469 ntBASIC25.17■■□□□ 1.62
ABCA4P78363 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
ABCA4P78363 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.16■■□□□ 1.62
ABCA4P78363 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
ABCA4P78363 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.14■■□□□ 1.61
ABCA4P78363 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
ABCA4P78363 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC25.13■■□□□ 1.61
ABCA4P78363 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
ABCA4P78363 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC25.12■■□□□ 1.61
ABCA4P78363 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC25.11■■□□□ 1.61
ABCA4P78363 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
ABCA4P78363 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
ABCA4P78363 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA4P78363 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.03■■□□□ 1.6
ABCA4P78363 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA4P78363 RPS2P35-201ENST00000443417 897 ntBASIC25.01■■□□□ 1.59
ABCA4P78363 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
ABCA4P78363 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
ABCA4P78363 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ABCA4P78363 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.97■■□□□ 1.59
ABCA4P78363 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
ABCA4P78363 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
ABCA4P78363 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.93■■□□□ 1.58
ABCA4P78363 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
ABCA4P78363 AC136428.2-201ENST00000563187 214 ntBASIC24.91■■□□□ 1.58
ABCA4P78363 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
ABCA4P78363 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
ABCA4P78363 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.89■■□□□ 1.57
ABCA4P78363 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.89■■□□□ 1.57
ABCA4P78363 AC097358.2-201ENST00000607541 1159 ntBASIC24.88■■□□□ 1.57
ABCA4P78363 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
ABCA4P78363 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.87■■□□□ 1.57
ABCA4P78363 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
ABCA4P78363 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24.83■■□□□ 1.57
ABCA4P78363 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
ABCA4P78363 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.82■■□□□ 1.56
ABCA4P78363 SETD8P1-201ENST00000623146 1180 ntBASIC24.82■■□□□ 1.56
ABCA4P78363 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.8■■□□□ 1.56
ABCA4P78363 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
ABCA4P78363 SUZ12P1-203ENST00000578195 985 ntBASIC24.78■■□□□ 1.56
ABCA4P78363 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC24.78■■□□□ 1.56
ABCA4P78363 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.78■■□□□ 1.56
ABCA4P78363 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC24.76■■□□□ 1.55
ABCA4P78363 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
ABCA4P78363 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.72■■□□□ 1.55
ABCA4P78363 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC24.71■■□□□ 1.55
ABCA4P78363 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ABCA4P78363 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
ABCA4P78363 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC24.67■■□□□ 1.54
ABCA4P78363 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA4P78363 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA4P78363 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
ABCA4P78363 AC145285.7-201ENST00000614819 1539 ntBASIC24.64■■□□□ 1.53
ABCA4P78363 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
ABCA4P78363 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC24.63■■□□□ 1.53
ABCA4P78363 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
ABCA4P78363 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.52
ABCA4P78363 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
ABCA4P78363 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC24.56■■□□□ 1.52
ABCA4P78363 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC24.55■■□□□ 1.52
ABCA4P78363 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC24.54■■□□□ 1.52
ABCA4P78363 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
ABCA4P78363 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
ABCA4P78363 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
ABCA4P78363 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
ABCA4P78363 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
ABCA4P78363 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.44■■□□□ 1.5
ABCA4P78363 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
ABCA4P78363 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
ABCA4P78363 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
ABCA4P78363 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.42■■□□□ 1.5
ABCA4P78363 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
ABCA4P78363 AL391121.1-201ENST00000607967 1349 ntBASIC24.39■■□□□ 1.5
ABCA4P78363 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
ABCA4P78363 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
ABCA4P78363 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
ABCA4P78363 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.37■■□□□ 1.49
ABCA4P78363 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
ABCA4P78363 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
ABCA4P78363 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
ABCA4P78363 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.35■■□□□ 1.49
ABCA4P78363 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
ABCA4P78363 CAHM-201ENST00000604200 896 ntBASIC24.32■■□□□ 1.48
ABCA4P78363 AL162393.1-201ENST00000437852 946 ntBASIC24.31■■□□□ 1.48
ABCA4P78363 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.31■■□□□ 1.48
ABCA4P78363 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms