Protein–RNA interactions for Protein: P05556

ITGB1, Integrin beta-1, humanhuman

Predictions only

Length 798 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1P05556 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
ITGB1P05556 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
ITGB1P05556 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
ITGB1P05556 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.54■■■□□ 2.64
ITGB1P05556 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.54■■■□□ 2.64
ITGB1P05556 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ITGB1P05556 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ITGB1P05556 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
ITGB1P05556 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.49■■■□□ 2.63
ITGB1P05556 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.47■■■□□ 2.63
ITGB1P05556 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.47■■■□□ 2.63
ITGB1P05556 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
ITGB1P05556 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
ITGB1P05556 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.43■■■□□ 2.62
ITGB1P05556 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.41■■■□□ 2.62
ITGB1P05556 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.41■■■□□ 2.62
ITGB1P05556 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.41■■■□□ 2.62
ITGB1P05556 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.4■■■□□ 2.62
ITGB1P05556 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
ITGB1P05556 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
ITGB1P05556 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.39■■■□□ 2.61
ITGB1P05556 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.36■■■□□ 2.61
ITGB1P05556 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.36■■■□□ 2.61
ITGB1P05556 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
ITGB1P05556 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.61
ITGB1P05556 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
ITGB1P05556 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.28■■■□□ 2.6
ITGB1P05556 RARRES2P7-201ENST00000567349 469 ntBASIC31.27■■■□□ 2.6
ITGB1P05556 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
ITGB1P05556 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ITGB1P05556 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
ITGB1P05556 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.19■■■□□ 2.58
ITGB1P05556 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.13■■■□□ 2.57
ITGB1P05556 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.09■■■□□ 2.57
ITGB1P05556 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.07■■■□□ 2.56
ITGB1P05556 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.05■■■□□ 2.56
ITGB1P05556 AC097358.2-201ENST00000607541 1159 ntBASIC31.05■■■□□ 2.56
ITGB1P05556 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ITGB1P05556 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
ITGB1P05556 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.03■■■□□ 2.56
ITGB1P05556 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
ITGB1P05556 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.01■■■□□ 2.55
ITGB1P05556 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31■■■□□ 2.55
ITGB1P05556 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
ITGB1P05556 AC136428.2-201ENST00000563187 214 ntBASIC30.98■■■□□ 2.55
ITGB1P05556 SETD8P1-201ENST00000623146 1180 ntBASIC30.96■■■□□ 2.55
ITGB1P05556 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.95■■■□□ 2.55
ITGB1P05556 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
ITGB1P05556 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
ITGB1P05556 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.9■■■□□ 2.54
ITGB1P05556 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.88■■■□□ 2.53
ITGB1P05556 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
ITGB1P05556 SUZ12P1-203ENST00000578195 985 ntBASIC30.85■■■□□ 2.53
ITGB1P05556 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
ITGB1P05556 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
ITGB1P05556 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
ITGB1P05556 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.81■■■□□ 2.52
ITGB1P05556 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
ITGB1P05556 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
ITGB1P05556 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.79■■■□□ 2.52
ITGB1P05556 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
ITGB1P05556 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.76■■■□□ 2.52
ITGB1P05556 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.76■■■□□ 2.51
ITGB1P05556 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.76■■■□□ 2.51
ITGB1P05556 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
ITGB1P05556 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
ITGB1P05556 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
ITGB1P05556 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.73■■■□□ 2.51
ITGB1P05556 AC145285.7-201ENST00000614819 1539 ntBASIC30.73■■■□□ 2.51
ITGB1P05556 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.72■■■□□ 2.51
ITGB1P05556 RPS2P35-201ENST00000443417 897 ntBASIC30.72■■■□□ 2.51
ITGB1P05556 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ITGB1P05556 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
ITGB1P05556 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
ITGB1P05556 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.69■■■□□ 2.5
ITGB1P05556 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
ITGB1P05556 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.65■■■□□ 2.5
ITGB1P05556 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
ITGB1P05556 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.65■■■□□ 2.5
ITGB1P05556 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
ITGB1P05556 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
ITGB1P05556 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.63■■■□□ 2.49
ITGB1P05556 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
ITGB1P05556 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
ITGB1P05556 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
ITGB1P05556 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.49■■■□□ 2.47
ITGB1P05556 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
ITGB1P05556 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
ITGB1P05556 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
ITGB1P05556 CAHM-201ENST00000604200 896 ntBASIC30.47■■■□□ 2.47
ITGB1P05556 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
ITGB1P05556 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
ITGB1P05556 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
ITGB1P05556 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ITGB1P05556 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.4■■■□□ 2.46
ITGB1P05556 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
ITGB1P05556 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ITGB1P05556 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.37■■■□□ 2.45
ITGB1P05556 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.35■■■□□ 2.45
ITGB1P05556 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.35■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms