Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.85■■■□□ 2.37
GFRA3O60609 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.82■■■□□ 2.36
GFRA3O60609 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.79■■■□□ 2.36
GFRA3O60609 SUZ12P1-203ENST00000578195 985 ntBASIC29.77■■■□□ 2.36
GFRA3O60609 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
GFRA3O60609 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
GFRA3O60609 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
GFRA3O60609 AC136428.2-201ENST00000563187 214 ntBASIC29.71■■■□□ 2.35
GFRA3O60609 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
GFRA3O60609 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
GFRA3O60609 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
GFRA3O60609 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.66■■■□□ 2.34
GFRA3O60609 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
GFRA3O60609 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
GFRA3O60609 SETD8P1-201ENST00000623146 1180 ntBASIC29.6■■■□□ 2.33
GFRA3O60609 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
GFRA3O60609 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
GFRA3O60609 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
GFRA3O60609 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.5■■■□□ 2.31
GFRA3O60609 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
GFRA3O60609 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.5■■■□□ 2.31
GFRA3O60609 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.5■■■□□ 2.31
GFRA3O60609 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.49■■■□□ 2.31
GFRA3O60609 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
GFRA3O60609 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
GFRA3O60609 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
GFRA3O60609 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
GFRA3O60609 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
GFRA3O60609 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.41■■■□□ 2.3
GFRA3O60609 MIR7108-201ENST00000614319 87 ntBASIC29.41■■■□□ 2.3
GFRA3O60609 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.4■■■□□ 2.3
GFRA3O60609 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
GFRA3O60609 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
GFRA3O60609 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
GFRA3O60609 AL162393.1-201ENST00000437852 946 ntBASIC29.34■■■□□ 2.29
GFRA3O60609 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
GFRA3O60609 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
GFRA3O60609 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.29■■■□□ 2.28
GFRA3O60609 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.28■■■□□ 2.28
GFRA3O60609 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.26■■■□□ 2.27
GFRA3O60609 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.26■■■□□ 2.27
GFRA3O60609 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.25■■■□□ 2.27
GFRA3O60609 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
GFRA3O60609 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
GFRA3O60609 ABHD17AP4-201ENST00000411545 909 ntBASIC29.22■■■□□ 2.27
GFRA3O60609 HLA-V-202ENST00000446817 847 ntBASIC29.22■■■□□ 2.27
GFRA3O60609 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.21■■■□□ 2.27
GFRA3O60609 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
GFRA3O60609 AP006261.1-201ENST00000584783 668 ntBASIC29.18■■■□□ 2.26
GFRA3O60609 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.17■■■□□ 2.26
GFRA3O60609 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.16■■■□□ 2.26
GFRA3O60609 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
GFRA3O60609 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.12■■■□□ 2.25
GFRA3O60609 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.12■■■□□ 2.25
GFRA3O60609 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.11■■■□□ 2.25
GFRA3O60609 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
GFRA3O60609 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.08■■■□□ 2.25
GFRA3O60609 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
GFRA3O60609 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.05■■■□□ 2.24
GFRA3O60609 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
GFRA3O60609 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.97■■■□□ 2.23
GFRA3O60609 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
GFRA3O60609 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.93■■■□□ 2.22
GFRA3O60609 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.93■■■□□ 2.22
GFRA3O60609 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
GFRA3O60609 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
GFRA3O60609 CAHM-201ENST00000604200 896 ntBASIC28.9■■■□□ 2.22
GFRA3O60609 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
GFRA3O60609 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.88■■■□□ 2.21
GFRA3O60609 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.88■■■□□ 2.21
GFRA3O60609 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
GFRA3O60609 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
GFRA3O60609 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
GFRA3O60609 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
GFRA3O60609 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.79■■■□□ 2.2
GFRA3O60609 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
GFRA3O60609 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
GFRA3O60609 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
GFRA3O60609 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.76■■■□□ 2.19
GFRA3O60609 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
GFRA3O60609 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
GFRA3O60609 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
GFRA3O60609 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.74■■■□□ 2.19
GFRA3O60609 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.71■■■□□ 2.19
GFRA3O60609 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.71■■■□□ 2.19
GFRA3O60609 MIR3665-201ENST00000578708 105 ntBASIC28.71■■■□□ 2.19
GFRA3O60609 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.69■■■□□ 2.18
GFRA3O60609 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
GFRA3O60609 AL391121.1-201ENST00000607967 1349 ntBASIC28.68■■■□□ 2.18
GFRA3O60609 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.67■■■□□ 2.18
GFRA3O60609 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.67■■■□□ 2.18
GFRA3O60609 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
GFRA3O60609 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
GFRA3O60609 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC28.64■■■□□ 2.18
GFRA3O60609 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.64■■■□□ 2.18
GFRA3O60609 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.64■■■□□ 2.18
GFRA3O60609 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.64■■■□□ 2.18
GFRA3O60609 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.63■■■□□ 2.17
GFRA3O60609 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.63■■■□□ 2.17
GFRA3O60609 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms