Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.84■□□□□ 0.459e-7■□□□□ 10.8
YBX3P16989 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.319e-7■□□□□ 10.8
YBX3P16989 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.59■□□□□ 0.259e-7■□□□□ 10.8
YBX3P16989 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.733e-7■□□□□ 10.8
YBX3P16989 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.02■□□□□ 0.643e-7■□□□□ 10.8
YBX3P16989 ASAH1-218ENST00000636009 2148 ntTSL 57.9□□□□□ -1.152e-7■□□□□ 10.8
YBX3P16989 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.49□□□□□ -1.372e-7■□□□□ 10.8
YBX3P16989 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.28□□□□□ -1.722e-7■□□□□ 10.8
YBX3P16989 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.283e-12■□□□□ 10.8
YBX3P16989 AC008982.1-202ENST00000602021 342 ntTSL 510.82□□□□□ -0.683e-12■□□□□ 10.8
YBX3P16989 HBE1-202ENST00000380237 913 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.542e-11■□□□□ 10.8
YBX3P16989 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.671e-8■□□□□ 10.8
YBX3P16989 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC33.26■■■□□ 2.915e-11■□□□□ 10.8
YBX3P16989 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.71■■□□□ 1.555e-11■□□□□ 10.8
YBX3P16989 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.925e-11■□□□□ 10.8
YBX3P16989 POLR3A-203ENST00000473588 1022 ntTSL 520.31■□□□□ 0.846e-11■□□□□ 10.8
YBX3P16989 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.825e-11■□□□□ 10.8
YBX3P16989 NDUFA10-207ENST00000443626 776 ntTSL 519.11■□□□□ 0.655e-11■□□□□ 10.8
YBX3P16989 BANF1-203ENST00000524628 612 ntTSL 218.97■□□□□ 0.635e-11■□□□□ 10.8
YBX3P16989 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.535e-11■□□□□ 10.8
YBX3P16989 PDE4DIP-231ENST00000533259 578 ntTSL 414.69□□□□□ -0.065e-11■□□□□ 10.8
YBX3P16989 BANF1-206ENST00000528648 362 ntTSL 313.45□□□□□ -0.265e-11■□□□□ 10.8
YBX3P16989 NDUFA10-208ENST00000444548 621 ntTSL 311.41□□□□□ -0.585e-11■□□□□ 10.8
YBX3P16989 BANF1-204ENST00000524663 251 ntTSL 310.08□□□□□ -0.85e-11■□□□□ 10.8
YBX3P16989 EXOC4-209ENST00000469115 755 ntTSL 38.39□□□□□ -1.073e-9■□□□□ 10.8
YBX3P16989 CSDE1-212ENST00000529046 571 ntTSL 47.38□□□□□ -1.231e-9■□□□□ 10.8
YBX3P16989 EXOC4-212ENST00000479839 543 ntTSL 47.36□□□□□ -1.233e-9■□□□□ 10.8
YBX3P16989 EXOC4-216ENST00000482089 628 ntTSL 47.36□□□□□ -1.233e-9■□□□□ 10.8
YBX3P16989 EXOC4-217ENST00000483800 559 ntTSL 47.36□□□□□ -1.233e-9■□□□□ 10.8
YBX3P16989 EXOC4-221ENST00000489931 578 ntTSL 47.36□□□□□ -1.233e-9■□□□□ 10.8
YBX3P16989 TBPL1-206ENST00000477527 634 ntTSL 56.62□□□□□ -1.357e-7■□□□□ 10.8
YBX3P16989 TBPL1-207ENST00000481694 284 ntTSL 26.23□□□□□ -1.417e-7■□□□□ 10.8
YBX3P16989 NDUFA10-209ENST00000448880 434 ntTSL 55.03□□□□□ -1.65e-11■□□□□ 10.8
YBX3P16989 TOP2A-204ENST00000578412 882 ntTSL 26.28□□□□□ -1.41e-13■□□□□ 10.8
YBX3P16989 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.3■□□□□ 0.681e-11■□□□□ 10.8
YBX3P16989 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.071e-11■□□□□ 10.8
YBX3P16989 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.171e-11■□□□□ 10.8
YBX3P16989 HMGB2-204ENST00000506267 629 ntTSL 329.61■■■□□ 2.332e-29■□□□□ 10.8
YBX3P16989 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.932e-29■□□□□ 10.8
YBX3P16989 HMGB2-205ENST00000511316 1841 ntTSL 215.68■□□□□ 0.12e-29■□□□□ 10.8
YBX3P16989 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.082e-29■□□□□ 10.8
YBX3P16989 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.022e-29■□□□□ 10.8
YBX3P16989 SF3A1-209ENST00000496189 693 ntTSL 221.11■□□□□ 0.972e-6■□□□□ 10.8
YBX3P16989 CLPX-204ENST00000559152 2228 ntTSL 1 (best)12.16□□□□□ -0.462e-9■□□□□ 10.8
YBX3P16989 IPO5-215ENST00000480641 543 ntTSL 431■■■□□ 2.555e-7■□□□□ 10.8
YBX3P16989 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.51■■□□□ 1.351e-13■□□□□ 10.8
YBX3P16989 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.861e-13■□□□□ 10.8
YBX3P16989 IPO5-228ENST00000497270 536 ntTSL 419.08■□□□□ 0.645e-7■□□□□ 10.8
YBX3P16989 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.51■□□□□ 0.071e-13■□□□□ 10.8
YBX3P16989 NIFK-204ENST00000451734 559 ntTSL 322.99■■□□□ 1.273e-7■□□□□ 10.8
YBX3P16989 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.063e-7■□□□□ 10.8
YBX3P16989 NIFK-205ENST00000477693 1096 ntTSL 1 (best)12.6□□□□□ -0.393e-7■□□□□ 10.8
YBX3P16989 NIFK-203ENST00000447132 759 ntTSL 1 (best)6.74□□□□□ -1.333e-7■□□□□ 10.8
YBX3P16989 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.719e-7■□□□□ 10.8
YBX3P16989 TRAPPC10-203ENST00000422875 5267 ntTSL 1 (best)17.87■□□□□ 0.456e-6■□□□□ 10.8
YBX3P16989 C16orf62-208ENST00000538552 552 ntTSL 215.61■□□□□ 0.096e-6■□□□□ 10.8
YBX3P16989 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.196e-6■□□□□ 10.8
YBX3P16989 C16orf62-213ENST00000541153 542 ntTSL 412.5□□□□□ -0.416e-6■□□□□ 10.8
YBX3P16989 C16orf62-206ENST00000535164 564 ntTSL 411.68□□□□□ -0.546e-6■□□□□ 10.8
YBX3P16989 C16orf62-210ENST00000539705 564 ntTSL 411.45□□□□□ -0.586e-6■□□□□ 10.8
YBX3P16989 TRAPPC10-205ENST00000461889 563 ntTSL 211.02□□□□□ -0.656e-6■□□□□ 10.8
YBX3P16989 C16orf62-205ENST00000513947 2501 ntTSL 1 (best) BASIC10.39□□□□□ -0.756e-6■□□□□ 10.8
YBX3P16989 EIF2AK4-207ENST00000559311 535 ntTSL 49.2□□□□□ -0.946e-6■□□□□ 10.8
YBX3P16989 TRAPPC10-209ENST00000481460 455 ntTSL 28.37□□□□□ -1.076e-6■□□□□ 10.8
YBX3P16989 EIF2AK4-202ENST00000558557 2449 ntTSL 27.32□□□□□ -1.246e-6■□□□□ 10.8
YBX3P16989 ATXN7L3B-201ENST00000519948 7604 ntAPPRIS P1 BASIC12.31□□□□□ -0.446e-6■□□□□ 10.8
YBX3P16989 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.382e-6■□□□□ 10.8
YBX3P16989 AC090004.1-202ENST00000601399 787 ntTSL 514.21□□□□□ -0.132e-6■□□□□ 10.8
YBX3P16989 AC090004.1-203ENST00000626721 886 ntTSL 511.71□□□□□ -0.532e-6■□□□□ 10.8
YBX3P16989 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.972e-6■□□□□ 10.8
YBX3P16989 G3BP2-201ENST00000357854 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.459e-7■□□□□ 10.8
YBX3P16989 TSTA3-215ENST00000532308 951 ntTSL 524.9■■□□□ 1.585e-7■□□□□ 10.8
YBX3P16989 TSTA3-216ENST00000533817 871 ntTSL 319.01■□□□□ 0.635e-7■□□□□ 10.8
YBX3P16989 TSTA3-209ENST00000529048 869 ntTSL 518.11■□□□□ 0.495e-7■□□□□ 10.8
YBX3P16989 TSTA3-212ENST00000530474 823 ntTSL 515.85■□□□□ 0.135e-7■□□□□ 10.8
YBX3P16989 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC12.86□□□□□ -0.352e-13■□□□□ 10.8
YBX3P16989 MXD3-207ENST00000509339 579 ntTSL 331.56■■■□□ 2.646e-6■□□□□ 10.8
YBX3P16989 TMBIM4-214ENST00000633367 876 ntTSL 1 (best)19.7■□□□□ 0.741e-6■□□□□ 10.8
YBX3P16989 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.89■□□□□ 0.611e-6■□□□□ 10.8
YBX3P16989 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.071e-6■□□□□ 10.8
YBX3P16989 AC078927.1-201ENST00000539652 984 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.21e-6■□□□□ 10.8
YBX3P16989 TMBIM4-210ENST00000545407 1303 ntTSL 58.29□□□□□ -1.081e-6■□□□□ 10.8
YBX3P16989 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC8.2□□□□□ -1.11e-6■□□□□ 10.8
YBX3P16989 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC8.2□□□□□ -1.11e-6■□□□□ 10.8
YBX3P16989 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.18□□□□□ -1.261e-6■□□□□ 10.8
YBX3P16989 BAG6-254ENST00000456286 807 ntTSL 1 (best)17.18■□□□□ 0.347e-11■□□□□ 10.8
YBX3P16989 COPZ1-201ENST00000262061 1897 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.398e-12■□□□□ 10.8
YBX3P16989 RACK1-207ENST00000503170 461 ntTSL 423.12■■□□□ 1.291e-60■□□□□ 10.8
YBX3P16989 SLC25A23-206ENST00000595810 734 ntTSL 519.29■□□□□ 0.683e-6■□□□□ 10.8
YBX3P16989 SLC25A23-207ENST00000597039 671 ntTSL 215.15■□□□□ 0.023e-6■□□□□ 10.8
YBX3P16989 SLC25A23-209ENST00000598704 736 ntTSL 313.11□□□□□ -0.313e-6■□□□□ 10.8
YBX3P16989 BCKDHA-206ENST00000542943 994 ntTSL 522.78■■□□□ 1.245e-7■□□□□ 10.8
YBX3P16989 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.852e-7■□□□□ 10.8
YBX3P16989 ARID3A-202ENST00000457152 549 ntTSL 518.23■□□□□ 0.512e-18■□□□□ 10.8
YBX3P16989 TCP1-216ENST00000545764 709 ntTSL 26.17□□□□□ -1.425e-12■□□□□ 10.8
YBX3P16989 ATP1A1-206ENST00000463382 584 ntTSL 29.16□□□□□ -0.943e-10■□□□□ 10.8
YBX3P16989 ODC1-204ENST00000446285 665 ntTSL 535.67■■■■□ 3.31e-10■□□□□ 10.8
YBX3P16989 VAC14-211ENST00000568886 2151 ntTSL 1 (best)18.74■□□□□ 0.591e-6■□□□□ 10.8
YBX3P16989 VAC14-210ENST00000568548 2945 ntTSL 1 (best)17.67■□□□□ 0.421e-6■□□□□ 10.8
YBX3P16989 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.361e-6■□□□□ 10.8
Retrieved 100 of 29,075 protein–RNA pairs in 205.6 ms