RNA–Protein interactions for RNA: ENST00000578412.1

TOP2A-204, Transcript of DNA topoisomerase II alpha, humanhuman

TSL 2

Gene TOP2A, Length 882 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP2A-204ENST00000578412 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
TOP2A-204ENST00000578412 CHIC1Q5VXU3 224 aa21.8■■□□□ 1.08
TOP2A-204ENST00000578412 SENP3Q9H4L4 574 aaPredicted RBP19.62■□□□□ 0.73
TOP2A-204ENST00000578412 PHF23Q9BUL5 403 aaPredicted RBP19.4■□□□□ 0.7
TOP2A-204ENST00000578412 FOXD1Q16676 465 aa18.39■□□□□ 0.53
TOP2A-204ENST00000578412 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
TOP2A-204ENST00000578412 MSH5O43196 834 aa17.15■□□□□ 0.34
TOP2A-204ENST00000578412 PPP6R1Q9UPN7 881 aa17.15■□□□□ 0.34
TOP2A-204ENST00000578412 PIAS4Q8N2W9 510 aaPredicted RBP17.05■□□□□ 0.32
TOP2A-204ENST00000578412 ADRA2BP18089 450 aa17.03■□□□□ 0.32
TOP2A-204ENST00000578412 POTEDQ86YR6 584 aa17.03■□□□□ 0.32
TOP2A-204ENST00000578412 MAPK8IP2Q13387 824 aaPredicted RBP15.7■□□□□ 0.1
TOP2A-204ENST00000578412 DMRT2Q9Y5R5 561 aa15.59■□□□□ 0.09
TOP2A-204ENST00000578412 SCAF1Q9H7N4 1312 aaKnown RBP15.54■□□□□ 0.08
TOP2A-204ENST00000578412 PPP4R3CPQ6ZMV5 832 aa15.46■□□□□ 0.07
TOP2A-204ENST00000578412 CNKSR2Q8WXI2 1034 aa15.07■□□□□ 0
TOP2A-204ENST00000578412 HOXD11P31277 338 aaPredicted RBP15□□□□□ -0.01
TOP2A-204ENST00000578412 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
TOP2A-204ENST00000578412 RNF216Q9NWF9 866 aaPredicted RBP14.85□□□□□ -0.03
TOP2A-204ENST00000578412 DCAF8L1A6NGE4 600 aa14.82□□□□□ -0.04
TOP2A-204ENST00000578412 CACNB1Q02641 598 aaPredicted RBP14.75□□□□□ -0.05
TOP2A-204ENST00000578412 NPM3O75607 178 aaKnown RBP14.72□□□□□ -0.05
TOP2A-204ENST00000578412 KCNA4P22459 653 aa14.72□□□□□ -0.05
TOP2A-204ENST00000578412 RNF39Q9H2S5 420 aa14.71□□□□□ -0.05
TOP2A-204ENST00000578412 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.09
TOP2A-204ENST00000578412 C1QBPQ07021 282 aaKnown RBP14.43□□□□□ -0.1
TOP2A-204ENST00000578412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.26□□□□□ -0.135e-13■■□□□ 13.4
TOP2A-204ENST00000578412 SLC4A2P04920 1241 aa13.98□□□□□ -0.17
TOP2A-204ENST00000578412 SLC4A1APQ9BWU0 796 aaKnown RBP13.96□□□□□ -0.17
TOP2A-204ENST00000578412 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
TOP2A-204ENST00000578412 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
TOP2A-204ENST00000578412 DSG3P32926 999 aa13.72□□□□□ -0.21
TOP2A-204ENST00000578412 CAPN15O75808 1086 aa13.68□□□□□ -0.22
TOP2A-204ENST00000578412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.61□□□□□ -0.23
TOP2A-204ENST00000578412 HNRNPUL2Q1KMD3 747 aaKnown RBP13.61□□□□□ -0.23
TOP2A-204ENST00000578412 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
TOP2A-204ENST00000578412 MYCNP04198 464 aaPredicted RBP13.59□□□□□ -0.23
TOP2A-204ENST00000578412 SAMD1Q6SPF0 538 aaPredicted RBP13.56□□□□□ -0.24
TOP2A-204ENST00000578412 APLP2Q06481 763 aa13.55□□□□□ -0.24
TOP2A-204ENST00000578412 TRHP20396 242 aaPredicted RBP13.54□□□□□ -0.24
TOP2A-204ENST00000578412 ZBTB22O15209 634 aa13.53□□□□□ -0.24
TOP2A-204ENST00000578412 ZNF219Q9P2Y4 722 aaPredicted RBP13.44□□□□□ -0.26
TOP2A-204ENST00000578412 ABCB7O75027 752 aa13.41□□□□□ -0.26
TOP2A-204ENST00000578412 ATF5Q9Y2D1 282 aaPredicted RBP13.31□□□□□ -0.28
TOP2A-204ENST00000578412 POTEHQ6S545 545 aa13.28□□□□□ -0.28
TOP2A-204ENST00000578412 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
TOP2A-204ENST00000578412 POLA2Q14181 598 aa13.22□□□□□ -0.29
TOP2A-204ENST00000578412 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
TOP2A-204ENST00000578412 ATXN8OSP0DMR3 200 aa13.12□□□□□ -0.31
TOP2A-204ENST00000578412 RBM42Q9BTD8 480 aaKnown RBP12.97□□□□□ -0.33
TOP2A-204ENST00000578412 ZBTB12Q9Y330 459 aaPredicted RBP12.89□□□□□ -0.35
TOP2A-204ENST00000578412 CHRDL2Q6WN34 429 aa12.81□□□□□ -0.36
TOP2A-204ENST00000578412 OSCARQ8IYS5 282 aa12.77□□□□□ -0.37
TOP2A-204ENST00000578412 FBLN2P98095 1184 aa12.75□□□□□ -0.37
TOP2A-204ENST00000578412 AKT1S1Q96B36 256 aa12.71□□□□□ -0.37
TOP2A-204ENST00000578412 MKRN4PQ13434 485 aaPredicted RBP12.68□□□□□ -0.38
TOP2A-204ENST00000578412 REM2Q8IYK8 340 aaPredicted RBP12.62□□□□□ -0.39
TOP2A-204ENST00000578412 SPDYE2BA6NHP3 402 aa12.53□□□□□ -0.4
TOP2A-204ENST00000578412 SPDYE6P0CI01 402 aa12.53□□□□□ -0.4
TOP2A-204ENST00000578412 SPDYE2Q495Y8 402 aa12.53□□□□□ -0.4
TOP2A-204ENST00000578412 PIP4P2Q8N4L2 257 aa12.51□□□□□ -0.41
TOP2A-204ENST00000578412 PITPNM1O00562 1244 aa12.49□□□□□ -0.41
TOP2A-204ENST00000578412 ZNF692Q9BU19 519 aaPredicted RBP12.49□□□□□ -0.41
TOP2A-204ENST00000578412 FXR2P51116 673 aaKnown RBP eCLIP12.45□□□□□ -0.422e-12■■□□□ 12.3
TOP2A-204ENST00000578412 SP7Q8TDD2 431 aaPredicted RBP12.39□□□□□ -0.43
TOP2A-204ENST00000578412 SSUH2Q9Y2M2 353 aa12.38□□□□□ -0.43
TOP2A-204ENST00000578412 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
TOP2A-204ENST00000578412 CLEC11AQ9Y240 323 aa12.31□□□□□ -0.44
TOP2A-204ENST00000578412 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
TOP2A-204ENST00000578412 SPDYE4A6NLX3 237 aa12.25□□□□□ -0.45
TOP2A-204ENST00000578412 EVX2Q03828 476 aa12.24□□□□□ -0.45
TOP2A-204ENST00000578412 HAX1O00165 279 aa12.22□□□□□ -0.45
TOP2A-204ENST00000578412 PRKAR2AP13861 404 aaKnown RBP12.12□□□□□ -0.47
TOP2A-204ENST00000578412 PRR29P0C7W0 189 aa12.11□□□□□ -0.47
TOP2A-204ENST00000578412 C19orf67A6NJJ6 358 aa12.05□□□□□ -0.48
TOP2A-204ENST00000578412 CHADLQ6NUI6 762 aa12.04□□□□□ -0.48
TOP2A-204ENST00000578412 STAG3Q9UJ98 1225 aa11.98□□□□□ -0.49
TOP2A-204ENST00000578412 FKBP8Q14318 412 aa11.97□□□□□ -0.49
TOP2A-204ENST00000578412 PROM2Q8N271 834 aa11.9□□□□□ -0.5
TOP2A-204ENST00000578412 GABBR2O75899 941 aa11.87□□□□□ -0.51
TOP2A-204ENST00000578412 CREBZFQ9NS37 354 aa11.84□□□□□ -0.51
TOP2A-204ENST00000578412 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
TOP2A-204ENST00000578412 CD44P16070 742 aaKnown RBP11.71□□□□□ -0.53
TOP2A-204ENST00000578412 POTEIP0CG38 1075 aa11.7□□□□□ -0.54
TOP2A-204ENST00000578412 MIER1Q8N108 512 aa11.69□□□□□ -0.54
TOP2A-204ENST00000578412 MNX1P50219 401 aaPredicted RBP11.65□□□□□ -0.54
TOP2A-204ENST00000578412 NPM1P06748 294 aaKnown RBP eCLIP11.64□□□□□ -0.55
TOP2A-204ENST00000578412 PLCD3Q8N3E9 789 aa11.64□□□□□ -0.55
TOP2A-204ENST00000578412 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
TOP2A-204ENST00000578412 LHX8Q68G74 356 aa11.61□□□□□ -0.55
TOP2A-204ENST00000578412 ZRANB1Q9UGI0 708 aa11.6□□□□□ -0.55
TOP2A-204ENST00000578412 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
TOP2A-204ENST00000578412 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
TOP2A-204ENST00000578412 CLCN6P51797 869 aa11.57□□□□□ -0.56
TOP2A-204ENST00000578412 PAK3O75914 559 aaPredicted RBP11.55□□□□□ -0.56
TOP2A-204ENST00000578412 TSPYL2Q9H2G4 693 aaPredicted RBP11.5□□□□□ -0.57
TOP2A-204ENST00000578412 PHF12Q96QT6 1004 aa11.47□□□□□ -0.57
TOP2A-204ENST00000578412 ZBTB47Q9UFB7 747 aaPredicted RBP11.46□□□□□ -0.57
TOP2A-204ENST00000578412 GALR2O43603 387 aaPredicted RBP11.45□□□□□ -0.58
TOP2A-204ENST00000578412 VASPP50552 380 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms