RNA–Protein interactions for RNA: ENST00000559152.5

CLPX-204, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 2,228 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-204ENST00000559152 NISCHQ9Y2I1 1504 aa24.38■■□□□ 1.49
CLPX-204ENST00000559152 CCDC180Q9P1Z9 1646 aa21.03■□□□□ 0.96
CLPX-204ENST00000559152 ZCCHC6Q5VYS8 1495 aaKnown RBP20.56■□□□□ 0.88
CLPX-204ENST00000559152 SHROOM4Q9ULL8 1493 aa20.19■□□□□ 0.82
CLPX-204ENST00000559152 DCAF1Q9Y4B6 1507 aa20.18■□□□□ 0.82
CLPX-204ENST00000559152 DCAF8L2P0C7V8 631 aa20.06■□□□□ 0.8
CLPX-204ENST00000559152 ABCC9O60706 1549 aa19.84■□□□□ 0.77
CLPX-204ENST00000559152 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
CLPX-204ENST00000559152 SUPT5HO00267 1087 aaKnown RBP19.69■□□□□ 0.74
CLPX-204ENST00000559152 NACADO15069 1562 aa19.53■□□□□ 0.72
CLPX-204ENST00000559152 SCRIBQ14160 1630 aa19.39■□□□□ 0.69
CLPX-204ENST00000559152 RB1CC1Q8TDY2 1594 aa19.25■□□□□ 0.67
CLPX-204ENST00000559152 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
CLPX-204ENST00000559152 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
CLPX-204ENST00000559152 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
CLPX-204ENST00000559152 UNC13AQ9UPW8 1703 aa18.87■□□□□ 0.61
CLPX-204ENST00000559152 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.6
CLPX-204ENST00000559152 BAZ1AQ9NRL2 1556 aaPredicted RBP18.81■□□□□ 0.6
CLPX-204ENST00000559152 WIZO95785 1651 aa18.68■□□□□ 0.58
CLPX-204ENST00000559152 PABPN1Q86U42 306 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLPX-204ENST00000559152 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
CLPX-204ENST00000559152 BICRAQ9NZM4 1560 aa18.6■□□□□ 0.57
CLPX-204ENST00000559152 TOP2AP11388 1531 aaKnown RBP18.54■□□□□ 0.56
CLPX-204ENST00000559152 TRIM41Q8WV44 630 aa18.53■□□□□ 0.56
CLPX-204ENST00000559152 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
CLPX-204ENST00000559152 CCDC88BA6NC98 1476 aa18.36■□□□□ 0.53
CLPX-204ENST00000559152 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
CLPX-204ENST00000559152 EIF4G1Q04637 1599 aaKnown RBP18.35■□□□□ 0.53
CLPX-204ENST00000559152 LOC105371045A0A1W2PR82 267 aa18.34■□□□□ 0.53
CLPX-204ENST00000559152 ATAD2BQ9ULI0 1458 aa18.24■□□□□ 0.51
CLPX-204ENST00000559152 BAZ1BQ9UIG0 1483 aaKnown RBP18.18■□□□□ 0.5
CLPX-204ENST00000559152 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
CLPX-204ENST00000559152 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
CLPX-204ENST00000559152 NCAPD3P42695 1498 aa18.03■□□□□ 0.48
CLPX-204ENST00000559152 HMGXB3Q12766 1538 aa18.02■□□□□ 0.48
CLPX-204ENST00000559152 PCGF6Q9BYE7 350 aa18.01■□□□□ 0.47
CLPX-204ENST00000559152 EEA1Q15075 1411 aa18■□□□□ 0.47
CLPX-204ENST00000559152 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
CLPX-204ENST00000559152 TRIM26Q12899 539 aaPredicted RBP17.94■□□□□ 0.46
CLPX-204ENST00000559152 CC2D2AQ9P2K1 1620 aa17.91■□□□□ 0.46
CLPX-204ENST00000559152 SOGA1O94964 1423 aa17.86■□□□□ 0.45
CLPX-204ENST00000559152 HRCP23327 699 aa17.86■□□□□ 0.45
CLPX-204ENST00000559152 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
CLPX-204ENST00000559152 EHMT2Q96KQ7 1210 aa17.85■□□□□ 0.45
CLPX-204ENST00000559152 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
CLPX-204ENST00000559152 TNIKQ9UKE5 1360 aa17.77■□□□□ 0.44
CLPX-204ENST00000559152 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
CLPX-204ENST00000559152 CFTRP13569 1480 aa17.74■□□□□ 0.43
CLPX-204ENST00000559152 RUSC2Q8N2Y8 1516 aa17.74■□□□□ 0.43
CLPX-204ENST00000559152 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
CLPX-204ENST00000559152 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
CLPX-204ENST00000559152 BIVM-ERCC5R4GMW8 1640 aa17.7■□□□□ 0.42
CLPX-204ENST00000559152 CEP164Q9UPV0 1460 aa17.69■□□□□ 0.42
CLPX-204ENST00000559152 CEP162Q5TB80 1403 aa17.68■□□□□ 0.42
CLPX-204ENST00000559152 KIF21BO75037 1637 aa17.67■□□□□ 0.42
CLPX-204ENST00000559152 UBTFP17480 764 aaKnown RBP17.67■□□□□ 0.42
CLPX-204ENST00000559152 CADPSQ9ULU8 1353 aa17.61■□□□□ 0.41
CLPX-204ENST00000559152 PRDM2Q13029 1718 aa17.6■□□□□ 0.41
CLPX-204ENST00000559152 CUX1P39880 1505 aa17.58■□□□□ 0.4
CLPX-204ENST00000559152 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
CLPX-204ENST00000559152 KIF27Q86VH2 1401 aa17.51■□□□□ 0.39
CLPX-204ENST00000559152 ERICH3Q5RHP9 1530 aa17.49■□□□□ 0.39
CLPX-204ENST00000559152 RAPGEF2Q9Y4G8 1499 aa17.48■□□□□ 0.39
CLPX-204ENST00000559152 PRXQ9BXM0 1461 aa17.47■□□□□ 0.39
CLPX-204ENST00000559152 CLIP1P30622 1438 aa17.46■□□□□ 0.39
CLPX-204ENST00000559152 PPARGC1BQ86YN6 1023 aaKnown RBP17.43■□□□□ 0.38
CLPX-204ENST00000559152 FANCD2Q9BXW9 1451 aa17.4■□□□□ 0.38
CLPX-204ENST00000559152 VPS8Q8N3P4 1428 aa17.37■□□□□ 0.37
CLPX-204ENST00000559152 FGD5Q6ZNL6 1462 aa17.34■□□□□ 0.37
CLPX-204ENST00000559152 NESP48681 1621 aa17.33■□□□□ 0.37
CLPX-204ENST00000559152 CUX2O14529 1486 aa17.33■□□□□ 0.37
CLPX-204ENST00000559152 LAMC3Q9Y6N6 1575 aa17.33■□□□□ 0.36
CLPX-204ENST00000559152 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
CLPX-204ENST00000559152 APLP2Q06481 763 aa17.31■□□□□ 0.36
CLPX-204ENST00000559152 IGF1RP08069 1367 aa17.29■□□□□ 0.36
CLPX-204ENST00000559152 TOPBP1Q92547 1522 aa17.24■□□□□ 0.35
CLPX-204ENST00000559152 PDS5BQ9NTI5 1447 aa17.23■□□□□ 0.35
CLPX-204ENST00000559152 CARMIL1Q5VZK9 1371 aa17.22■□□□□ 0.35
CLPX-204ENST00000559152 TTBK1Q5TCY1 1321 aaPredicted RBP17.21■□□□□ 0.35
CLPX-204ENST00000559152 ABCA10Q8WWZ4 1543 aa17.21■□□□□ 0.35
CLPX-204ENST00000559152 RANGAP1P46060 587 aaPredicted RBP17.2■□□□□ 0.34
CLPX-204ENST00000559152 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
CLPX-204ENST00000559152 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
CLPX-204ENST00000559152 CCER1Q8TC90 406 aaPredicted RBP17.16■□□□□ 0.34
CLPX-204ENST00000559152 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
CLPX-204ENST00000559152 RAD54L2Q9Y4B4 1467 aa17.13■□□□□ 0.33
CLPX-204ENST00000559152 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
CLPX-204ENST00000559152 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
CLPX-204ENST00000559152 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.11■□□□□ 0.33
CLPX-204ENST00000559152 CUL7Q14999 1698 aa17.09■□□□□ 0.33
CLPX-204ENST00000559152 WDR97A6NE52 1622 aa17.04■□□□□ 0.32
CLPX-204ENST00000559152 ERCC6Q03468 1493 aa17.02■□□□□ 0.32
CLPX-204ENST00000559152 MAP3K1Q13233 1512 aa17.01■□□□□ 0.31
CLPX-204ENST00000559152 FHAD1B1AJZ9 1412 aa17.01■□□□□ 0.31
CLPX-204ENST00000559152 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
CLPX-204ENST00000559152 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
CLPX-204ENST00000559152 EFCAB5A4FU69 1503 aa16.98■□□□□ 0.31
CLPX-204ENST00000559152 HNRNPUL2Q1KMD3 747 aaKnown RBP16.96■□□□□ 0.3
CLPX-204ENST00000559152 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.3
CLPX-204ENST00000559152 TDRD9Q8NDG6 1382 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms