RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 NISCHQ9Y2I1 1504 aa39.56■■■■□ 3.92
SF3A1-209ENST00000496189 CCDC180Q9P1Z9 1646 aa35.25■■■■□ 3.23
SF3A1-209ENST00000496189 ABCC9O60706 1549 aa34.5■■■■□ 3.11
SF3A1-209ENST00000496189 RB1CC1Q8TDY2 1594 aa33.24■■■□□ 2.91
SF3A1-209ENST00000496189 DCAF8L2P0C7V8 631 aa33.2■■■□□ 2.91
SF3A1-209ENST00000496189 NACADO15069 1562 aa33.15■■■□□ 2.9
SF3A1-209ENST00000496189 ZCCHC6Q5VYS8 1495 aaKnown RBP32.93■■■□□ 2.86
SF3A1-209ENST00000496189 MYO15BQ96JP2 1530 aa32.92■■■□□ 2.86
SF3A1-209ENST00000496189 DCAF1Q9Y4B6 1507 aa32.75■■■□□ 2.83
SF3A1-209ENST00000496189 UNC13AQ9UPW8 1703 aa32.35■■■□□ 2.77
SF3A1-209ENST00000496189 PABPN1Q86U42 306 aaKnown RBP eCLIP32.21■■■□□ 2.75
SF3A1-209ENST00000496189 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
SF3A1-209ENST00000496189 BICRAQ9NZM4 1560 aa32.08■■■□□ 2.73
SF3A1-209ENST00000496189 SHROOM4Q9ULL8 1493 aa31.9■■■□□ 2.7
SF3A1-209ENST00000496189 DNAJC5BQ9UF47 199 aa31.57■■■□□ 2.64
SF3A1-209ENST00000496189 EIF4G1Q04637 1599 aaKnown RBP31.32■■■□□ 2.6
SF3A1-209ENST00000496189 CC2D2AQ9P2K1 1620 aa31.2■■■□□ 2.58
SF3A1-209ENST00000496189 CECR2Q9BXF3 1484 aa31.03■■■□□ 2.56
SF3A1-209ENST00000496189 BAZ1AQ9NRL2 1556 aaPredicted RBP30.74■■■□□ 2.51
SF3A1-209ENST00000496189 SMARCA4P51532 1647 aa30.73■■■□□ 2.51
SF3A1-209ENST00000496189 SMARCA2P51531 1590 aa30.59■■■□□ 2.49
SF3A1-209ENST00000496189 NCAPD3P42695 1498 aa30.55■■■□□ 2.48
SF3A1-209ENST00000496189 ATAD2BQ9ULI0 1458 aa30.55■■■□□ 2.48
SF3A1-209ENST00000496189 MROH2BQ7Z745 1585 aa30.45■■■□□ 2.47
SF3A1-209ENST00000496189 HMGXB3Q12766 1538 aa30.43■■■□□ 2.46
SF3A1-209ENST00000496189 PEG3Q9GZU2 1588 aa30.4■■■□□ 2.46
SF3A1-209ENST00000496189 BAZ1BQ9UIG0 1483 aaKnown RBP30.38■■■□□ 2.45
SF3A1-209ENST00000496189 WIZO95785 1651 aa30.14■■■□□ 2.42
SF3A1-209ENST00000496189 RSF1Q96T23 1441 aaPredicted RBP30.1■■■□□ 2.41
SF3A1-209ENST00000496189 TOP2AP11388 1531 aaKnown RBP29.86■■■□□ 2.37
SF3A1-209ENST00000496189 ERCC6Q03468 1493 aa29.85■■■□□ 2.37
SF3A1-209ENST00000496189 LAMC3Q9Y6N6 1575 aa29.81■■■□□ 2.36
SF3A1-209ENST00000496189 NESP48681 1621 aa29.79■■■□□ 2.36
SF3A1-209ENST00000496189 CADPSQ9ULU8 1353 aa29.68■■■□□ 2.34
SF3A1-209ENST00000496189 PDS5BQ9NTI5 1447 aa29.65■■■□□ 2.34
SF3A1-209ENST00000496189 CUX2O14529 1486 aa29.5■■■□□ 2.31
SF3A1-209ENST00000496189 KIF21AQ7Z4S6 1674 aa29.48■■■□□ 2.31
SF3A1-209ENST00000496189 CCDC88BA6NC98 1476 aa29.48■■■□□ 2.31
SF3A1-209ENST00000496189 CFTRP13569 1480 aa29.47■■■□□ 2.31
SF3A1-209ENST00000496189 SUPT5HO00267 1087 aaKnown RBP29.4■■■□□ 2.3
SF3A1-209ENST00000496189 THOC2Q8NI27 1593 aaKnown RBP29.38■■■□□ 2.29
SF3A1-209ENST00000496189 FANCD2Q9BXW9 1451 aa29.36■■■□□ 2.29
SF3A1-209ENST00000496189 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
SF3A1-209ENST00000496189 MRC2Q9UBG0 1479 aa29.3■■■□□ 2.28
SF3A1-209ENST00000496189 PRDM2Q13029 1718 aa29.29■■■□□ 2.28
SF3A1-209ENST00000496189 WDR62O43379 1518 aa29.16■■■□□ 2.26
SF3A1-209ENST00000496189 URB2Q14146 1524 aaKnown RBP29■■■□□ 2.23
SF3A1-209ENST00000496189 ABCC8Q09428 1581 aa28.94■■■□□ 2.22
SF3A1-209ENST00000496189 TOPBP1Q92547 1522 aa28.85■■■□□ 2.21
SF3A1-209ENST00000496189 DNMBPQ6XZF7 1577 aa28.85■■■□□ 2.21
SF3A1-209ENST00000496189 IFT140Q96RY7 1462 aa28.73■■■□□ 2.19
SF3A1-209ENST00000496189 POLA1P09884 1462 aaPredicted RBP28.6■■■□□ 2.17
SF3A1-209ENST00000496189 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
SF3A1-209ENST00000496189 CUX1P39880 1505 aa28.59■■■□□ 2.17
SF3A1-209ENST00000496189 FGD5Q6ZNL6 1462 aa28.54■■■□□ 2.16
SF3A1-209ENST00000496189 SOGA1O94964 1423 aa28.52■■■□□ 2.16
SF3A1-209ENST00000496189 ZNF608Q9ULD9 1512 aaPredicted RBP28.52■■■□□ 2.16
SF3A1-209ENST00000496189 TARBP1Q13395 1621 aaKnown RBP28.51■■■□□ 2.15
SF3A1-209ENST00000496189 EIF4G3O43432 1585 aaKnown RBP28.46■■■□□ 2.15
SF3A1-209ENST00000496189 WRNQ14191 1432 aaPredicted RBP eCLIP28.46■■■□□ 2.15
SF3A1-209ENST00000496189 RAD54L2Q9Y4B4 1467 aa28.46■■■□□ 2.15
SF3A1-209ENST00000496189 WDR97A6NE52 1622 aa28.39■■■□□ 2.13
SF3A1-209ENST00000496189 TOP2BQ02880 1626 aa28.38■■■□□ 2.13
SF3A1-209ENST00000496189 AQRO60306 1485 aaKnown RBP eCLIP28.38■■■□□ 2.132e-6■■■□□ 18.3
SF3A1-209ENST00000496189 BIVM-ERCC5R4GMW8 1640 aa28.36■■■□□ 2.13
SF3A1-209ENST00000496189 TDRD9Q8NDG6 1382 aaKnown RBP28.34■■■□□ 2.13
SF3A1-209ENST00000496189 SYNJ1O43426 1573 aa28.33■■■□□ 2.12
SF3A1-209ENST00000496189 OSCARQ8IYS5 282 aa28.29■■■□□ 2.12
SF3A1-209ENST00000496189 ABCA10Q8WWZ4 1543 aa28.26■■■□□ 2.11
SF3A1-209ENST00000496189 GRIN2BQ13224 1484 aa28.21■■■□□ 2.11
SF3A1-209ENST00000496189 GAPVD1Q14C86 1478 aa28.2■■■□□ 2.1
SF3A1-209ENST00000496189 FBLN2P98095 1184 aa28.17■■■□□ 2.1
SF3A1-209ENST00000496189 SNAPC4Q5SXM2 1469 aa28.15■■■□□ 2.1
SF3A1-209ENST00000496189 MAGI1Q96QZ7 1491 aaPredicted RBP28.15■■■□□ 2.1
SF3A1-209ENST00000496189 ABCA5Q8WWZ7 1642 aa28.13■■■□□ 2.09
SF3A1-209ENST00000496189 PBRM1Q86U86 1689 aa28.13■■■□□ 2.09
SF3A1-209ENST00000496189 CHD1O14646 1710 aa28.11■■■□□ 2.09
SF3A1-209ENST00000496189 CHMP7Q8WUX9 453 aaPredicted RBP28.08■■■□□ 2.09
SF3A1-209ENST00000496189 SYNJ2O15056 1496 aa28.02■■■□□ 2.08
SF3A1-209ENST00000496189 ERICH3Q5RHP9 1530 aa27.96■■■□□ 2.07
SF3A1-209ENST00000496189 KIF27Q86VH2 1401 aa27.9■■■□□ 2.06
SF3A1-209ENST00000496189 ADAMTS12P58397 1594 aa27.89■■■□□ 2.05
SF3A1-209ENST00000496189 FHAD1B1AJZ9 1412 aa27.88■■■□□ 2.05
SF3A1-209ENST00000496189 GRIN2AQ12879 1464 aa27.82■■■□□ 2.04
SF3A1-209ENST00000496189 TRIM41Q8WV44 630 aa27.81■■■□□ 2.04
SF3A1-209ENST00000496189 RIMBP3CA6NJZ7 1639 aa27.78■■■□□ 2.04
SF3A1-209ENST00000496189 RIMBP3BA6NNM3 1639 aa27.78■■■□□ 2.04
SF3A1-209ENST00000496189 RIMBP3Q9UFD9 1639 aa27.78■■■□□ 2.04
SF3A1-209ENST00000496189 ARHGEF11O15085 1522 aa27.77■■■□□ 2.04
SF3A1-209ENST00000496189 CLASP1Q7Z460 1538 aa27.77■■■□□ 2.04
SF3A1-209ENST00000496189 CUL7Q14999 1698 aa27.73■■■□□ 2.03
SF3A1-209ENST00000496189 IGF1RP08069 1367 aa27.7■■■□□ 2.02
SF3A1-209ENST00000496189 NUP160Q12769 1436 aa27.67■■■□□ 2.02
SF3A1-209ENST00000496189 CEP170Q5SW79 1584 aa27.64■■■□□ 2.01
SF3A1-209ENST00000496189 CARMIL1Q5VZK9 1371 aa27.6■■■□□ 2.01
SF3A1-209ENST00000496189 CYB5RLQ6IPT4 315 aa27.55■■■□□ 2
SF3A1-209ENST00000496189 ARAP1Q96P48 1450 aa27.51■■■□□ 2
SF3A1-209ENST00000496189 RUSC2Q8N2Y8 1516 aa27.48■■□□□ 1.99
SF3A1-209ENST00000496189 SHROOM2Q13796 1616 aa27.45■■□□□ 1.99
SF3A1-209ENST00000496189 RAPGEF2Q9Y4G8 1499 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms