RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 NISCHQ9Y2I1 1504 aa34.93■■■■□ 3.18
USP48-204ENST00000400301 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
USP48-204ENST00000400301 SHROOM4Q9ULL8 1493 aa31.79■■■□□ 2.68
USP48-204ENST00000400301 SUPT5HO00267 1087 aaKnown RBP31.75■■■□□ 2.67
USP48-204ENST00000400301 EHMT2Q96KQ7 1210 aa29.87■■■□□ 2.37
USP48-204ENST00000400301 PCGF6Q9BYE7 350 aa29.77■■■□□ 2.36
USP48-204ENST00000400301 FAM9AQ8IZU1 332 aaPredicted RBP29.64■■■□□ 2.34
USP48-204ENST00000400301 CHIC1Q5VXU3 224 aa29.59■■■□□ 2.33
USP48-204ENST00000400301 TRIM41Q8WV44 630 aa29.44■■■□□ 2.3
USP48-204ENST00000400301 ZCCHC6Q5VYS8 1495 aaKnown RBP29.24■■■□□ 2.27
USP48-204ENST00000400301 LOC105371045A0A1W2PR82 267 aa29.15■■■□□ 2.26
USP48-204ENST00000400301 HRCP23327 699 aa28.97■■■□□ 2.23
USP48-204ENST00000400301 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
USP48-204ENST00000400301 TTBK1Q5TCY1 1321 aaPredicted RBP28.87■■■□□ 2.21
USP48-204ENST00000400301 TRIM26Q12899 539 aaPredicted RBP28.8■■■□□ 2.2
USP48-204ENST00000400301 ZEB1P37275 1124 aaPredicted RBP28.73■■■□□ 2.19
USP48-204ENST00000400301 ABCC9O60706 1549 aa28.7■■■□□ 2.19
USP48-204ENST00000400301 APLP2Q06481 763 aa28.64■■■□□ 2.18
USP48-204ENST00000400301 PPARGC1BQ86YN6 1023 aaKnown RBP28.62■■■□□ 2.17
USP48-204ENST00000400301 UBTFP17480 764 aaKnown RBP28.54■■■□□ 2.16
USP48-204ENST00000400301 CCER1Q8TC90 406 aaPredicted RBP28.51■■■□□ 2.15
USP48-204ENST00000400301 RANGAP1P46060 587 aaPredicted RBP28.44■■■□□ 2.14
USP48-204ENST00000400301 SCRIBQ14160 1630 aa28.28■■■□□ 2.12
USP48-204ENST00000400301 MYO15BQ96JP2 1530 aa28.26■■■□□ 2.11
USP48-204ENST00000400301 PABPN1Q86U42 306 aaKnown RBP eCLIP28.09■■■□□ 2.09
USP48-204ENST00000400301 DCAF1Q9Y4B6 1507 aa28.02■■■□□ 2.08
USP48-204ENST00000400301 RSF1Q96T23 1441 aaPredicted RBP27.92■■■□□ 2.06
USP48-204ENST00000400301 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.89■■■□□ 2.05
USP48-204ENST00000400301 CENPBP07199 599 aaPredicted RBP27.88■■■□□ 2.05
USP48-204ENST00000400301 ATP1B4Q9UN42 357 aaPredicted RBP27.73■■■□□ 2.03
USP48-204ENST00000400301 HNRNPUL2Q1KMD3 747 aaKnown RBP27.73■■■□□ 2.03
USP48-204ENST00000400301 CSRNP3Q8WYN3 585 aa27.58■■■□□ 2
USP48-204ENST00000400301 YTHDC1Q96MU7 727 aaKnown RBP27.57■■■□□ 2
USP48-204ENST00000400301 NACADO15069 1562 aa27.53■■■□□ 2
USP48-204ENST00000400301 PELP1Q8IZL8 1130 aaKnown RBP27.45■■□□□ 1.99
USP48-204ENST00000400301 CECR2Q9BXF3 1484 aa27.44■■□□□ 1.98
USP48-204ENST00000400301 ITGAEP38570 1179 aa27.43■■□□□ 1.98
USP48-204ENST00000400301 DIEXFQ68CQ4 756 aaKnown RBP27.4■■□□□ 1.98
USP48-204ENST00000400301 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
USP48-204ENST00000400301 MROH2BQ7Z745 1585 aa27.17■■□□□ 1.94
USP48-204ENST00000400301 BAZ1AQ9NRL2 1556 aaPredicted RBP27.11■■□□□ 1.93
USP48-204ENST00000400301 ZNF316A6NFI3 1004 aaPredicted RBP27■■□□□ 1.91
USP48-204ENST00000400301 CEP162Q5TB80 1403 aa26.96■■□□□ 1.91
USP48-204ENST00000400301 EEA1Q15075 1411 aa26.9■■□□□ 1.9
USP48-204ENST00000400301 FAM50AQ14320 339 aaKnown RBP26.9■■□□□ 1.9
USP48-204ENST00000400301 WRNQ14191 1432 aaPredicted RBP eCLIP26.88■■□□□ 1.89
USP48-204ENST00000400301 WIZO95785 1651 aa26.84■■□□□ 1.89
USP48-204ENST00000400301 GTF3C3Q9Y5Q9 886 aa26.82■■□□□ 1.88
USP48-204ENST00000400301 TNIKQ9UKE5 1360 aa26.82■■□□□ 1.88
USP48-204ENST00000400301 CLIP1P30622 1438 aa26.8■■□□□ 1.88
USP48-204ENST00000400301 GOLGA3Q08378 1498 aa26.8■■□□□ 1.88
USP48-204ENST00000400301 ACIN1Q9UKV3 1341 aaKnown RBP26.79■■□□□ 1.88
USP48-204ENST00000400301 CCDC88BA6NC98 1476 aa26.78■■□□□ 1.88
USP48-204ENST00000400301 SOGA1O94964 1423 aa26.78■■□□□ 1.88
USP48-204ENST00000400301 P3H3Q8IVL6 736 aa26.74■■□□□ 1.87
USP48-204ENST00000400301 NEFLP07196 543 aa26.72■■□□□ 1.87
USP48-204ENST00000400301 ABCC8Q09428 1581 aa26.72■■□□□ 1.87
USP48-204ENST00000400301 BAZ1BQ9UIG0 1483 aaKnown RBP26.71■■□□□ 1.87
USP48-204ENST00000400301 NEUROD1Q13562 356 aa26.69■■□□□ 1.86
USP48-204ENST00000400301 CEP164Q9UPV0 1460 aa26.6■■□□□ 1.85
USP48-204ENST00000400301 TOP2AP11388 1531 aaKnown RBP26.58■■□□□ 1.85
USP48-204ENST00000400301 SCAF1Q9H7N4 1312 aaKnown RBP26.5■■□□□ 1.83
USP48-204ENST00000400301 SMARCA4P51532 1647 aa26.41■■□□□ 1.82
USP48-204ENST00000400301 TRIM52Q96A61 297 aa26.41■■□□□ 1.82
USP48-204ENST00000400301 POLR3GLQ9BT43 218 aa26.34■■□□□ 1.81
USP48-204ENST00000400301 KIF27Q86VH2 1401 aa26.34■■□□□ 1.81
USP48-204ENST00000400301 MIER1Q8N108 512 aa26.34■■□□□ 1.81
USP48-204ENST00000400301 RUSC2Q8N2Y8 1516 aa26.28■■□□□ 1.8
USP48-204ENST00000400301 ARID3CA6NKF2 412 aa26.27■■□□□ 1.8
USP48-204ENST00000400301 CNGB1Q14028 1251 aaPredicted RBP26.26■■□□□ 1.79
USP48-204ENST00000400301 ERICH6Q7L0X2 663 aa26.24■■□□□ 1.79
USP48-204ENST00000400301 VPS8Q8N3P4 1428 aa26.23■■□□□ 1.79
USP48-204ENST00000400301 SMARCA2P51531 1590 aa26.22■■□□□ 1.79
USP48-204ENST00000400301 ANP32CO43423 234 aa26.22■■□□□ 1.79
USP48-204ENST00000400301 MYT1Q01538 1121 aa26.2■■□□□ 1.78
USP48-204ENST00000400301 ATAD2BQ9ULI0 1458 aa26.17■■□□□ 1.78
USP48-204ENST00000400301 BCANQ96GW7 911 aa26.13■■□□□ 1.77
USP48-204ENST00000400301 FBLN2P98095 1184 aa26.1■■□□□ 1.77
USP48-204ENST00000400301 DDX10Q13206 875 aaKnown RBP26.1■■□□□ 1.77
USP48-204ENST00000400301 KANK4Q5T7N3 995 aaPredicted RBP26.05■■□□□ 1.76
USP48-204ENST00000400301 TONSLQ96HA7 1378 aa26.05■■□□□ 1.76
USP48-204ENST00000400301 RAPGEF2Q9Y4G8 1499 aa26.04■■□□□ 1.76
USP48-204ENST00000400301 MTUS2Q5JR59 1369 aa26.03■■□□□ 1.76
USP48-204ENST00000400301 CUX2O14529 1486 aa26.02■■□□□ 1.76
USP48-204ENST00000400301 CLSPNQ9HAW4 1339 aa25.98■■□□□ 1.75
USP48-204ENST00000400301 CARMIL1Q5VZK9 1371 aa25.97■■□□□ 1.75
USP48-204ENST00000400301 CCNB3Q8WWL7 1395 aa25.97■■□□□ 1.75
USP48-204ENST00000400301 ZNF326Q5BKZ1 582 aaKnown RBP25.97■■□□□ 1.75
USP48-204ENST00000400301 CHIC2Q9UKJ5 165 aa25.97■■□□□ 1.75
USP48-204ENST00000400301 HIRIP3Q9BW71 556 aaPredicted RBP25.92■■□□□ 1.74
USP48-204ENST00000400301 MYT1LQ9UL68 1186 aa25.89■■□□□ 1.73
USP48-204ENST00000400301 CDK11AQ9UQ88 783 aaPredicted RBP25.88■■□□□ 1.73
USP48-204ENST00000400301 ZNF777Q9ULD5 760 aaPredicted RBP25.88■■□□□ 1.73
USP48-204ENST00000400301 SIN3AQ96ST3 1273 aa25.82■■□□□ 1.72
USP48-204ENST00000400301 FHAD1B1AJZ9 1412 aa25.79■■□□□ 1.72
USP48-204ENST00000400301 RRP7BPQ9NSQ0 103 aa25.78■■□□□ 1.72
USP48-204ENST00000400301 FKBP8Q14318 412 aa25.76■■□□□ 1.71
USP48-204ENST00000400301 CADPSQ9ULU8 1353 aa25.71■■□□□ 1.71
USP48-204ENST00000400301 HNRNPUQ00839 825 aaKnown RBP eCLIP25.67■■□□□ 1.7
USP48-204ENST00000400301 SYNJ1O43426 1573 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms