Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC27.18■■□□□ 1.94
SH3RF1Q7Z6J0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
SH3RF1Q7Z6J0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SH3RF1Q7Z6J0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SH3RF1Q7Z6J0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 AC087393.1-201ENST00000582896 145 ntBASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.16■■□□□ 1.94
SH3RF1Q7Z6J0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
SH3RF1Q7Z6J0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SH3RF1Q7Z6J0 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SH3RF1Q7Z6J0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SH3RF1Q7Z6J0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SH3RF1Q7Z6J0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SH3RF1Q7Z6J0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC27.14■■□□□ 1.93
SH3RF1Q7Z6J0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.13■■□□□ 1.93
SH3RF1Q7Z6J0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.13■■□□□ 1.93
SH3RF1Q7Z6J0 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SH3RF1Q7Z6J0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.12■■□□□ 1.93
SH3RF1Q7Z6J0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC27.12■■□□□ 1.93
SH3RF1Q7Z6J0 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SH3RF1Q7Z6J0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.11■■□□□ 1.93
SH3RF1Q7Z6J0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 MIR638-201ENST00000385237 100 ntBASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SH3RF1Q7Z6J0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 LONRF2P2-201ENST00000439212 571 ntBASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SH3RF1Q7Z6J0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 UNC93B8-201ENST00000511903 705 ntBASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 MIR4787-201ENST00000607364 84 ntBASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
SH3RF1Q7Z6J0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.92
SH3RF1Q7Z6J0 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.08■■□□□ 1.92
SH3RF1Q7Z6J0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SH3RF1Q7Z6J0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 RPS2P7-201ENST00000447334 885 ntBASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.06■■□□□ 1.92
SH3RF1Q7Z6J0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.05■■□□□ 1.92
SH3RF1Q7Z6J0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 KRT125P-201ENST00000546827 989 ntBASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SH3RF1Q7Z6J0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SH3RF1Q7Z6J0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
SH3RF1Q7Z6J0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
SH3RF1Q7Z6J0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SH3RF1Q7Z6J0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms