RNA–Protein interactions for RNA: ENST00000587502.2

LSM7-204, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM7, Length 575 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-204ENST00000587502 NISCHQ9Y2I1 1504 aa57.36■■■■■ 6.77
LSM7-204ENST00000587502 CCDC180Q9P1Z9 1646 aa51.22■■■■■ 5.79
LSM7-204ENST00000587502 ABCC9O60706 1549 aa50.57■■■■■ 5.69
LSM7-204ENST00000587502 RB1CC1Q8TDY2 1594 aa48.49■■■■■ 5.35
LSM7-204ENST00000587502 NACADO15069 1562 aa48.33■■■■■ 5.33
LSM7-204ENST00000587502 DCAF8L2P0C7V8 631 aa48.18■■■■■ 5.3
LSM7-204ENST00000587502 MYO15BQ96JP2 1530 aa47.91■■■■■ 5.26
LSM7-204ENST00000587502 ZCCHC6Q5VYS8 1495 aaKnown RBP47.65■■■■■ 5.22
LSM7-204ENST00000587502 DCAF1Q9Y4B6 1507 aa47.49■■■■■ 5.19
LSM7-204ENST00000587502 UNC13AQ9UPW8 1703 aa47.26■■■■■ 5.16
LSM7-204ENST00000587502 PABPN1Q86U42 306 aaKnown RBP eCLIP47.19■■■■■ 5.14
LSM7-204ENST00000587502 BICRAQ9NZM4 1560 aa46.95■■■■■ 5.11
LSM7-204ENST00000587502 DNAJC5BQ9UF47 199 aa46.86■■■■■ 5.09
LSM7-204ENST00000587502 SCRIBQ14160 1630 aa46.64■■■■■ 5.06
LSM7-204ENST00000587502 SHROOM4Q9ULL8 1493 aa46.57■■■■■ 5.04
LSM7-204ENST00000587502 EIF4G1Q04637 1599 aaKnown RBP45.8■■■■■ 4.92
LSM7-204ENST00000587502 CC2D2AQ9P2K1 1620 aa45.73■■■■■ 4.91
LSM7-204ENST00000587502 CECR2Q9BXF3 1484 aa45.55■■■■■ 4.88
LSM7-204ENST00000587502 NCAPD3P42695 1498 aa44.59■■■■■ 4.73
LSM7-204ENST00000587502 SMARCA4P51532 1647 aa44.59■■■■■ 4.73
LSM7-204ENST00000587502 BAZ1AQ9NRL2 1556 aaPredicted RBP44.52■■■■■ 4.72
LSM7-204ENST00000587502 ATAD2BQ9ULI0 1458 aa44.52■■■■■ 4.72
LSM7-204ENST00000587502 SMARCA2P51531 1590 aa44.47■■■■■ 4.71
LSM7-204ENST00000587502 HMGXB3Q12766 1538 aa44.31■■■■■ 4.68
LSM7-204ENST00000587502 PEG3Q9GZU2 1588 aa44.2■■■■■ 4.67
LSM7-204ENST00000587502 MROH2BQ7Z745 1585 aa44.15■■■■■ 4.66
LSM7-204ENST00000587502 BAZ1BQ9UIG0 1483 aaKnown RBP44.13■■■■■ 4.65
LSM7-204ENST00000587502 DNAJC5Q9H3Z4 198 aa43.8■■■■■ 4.6
LSM7-204ENST00000587502 ERCC6Q03468 1493 aa43.7■■■■■ 4.59
LSM7-204ENST00000587502 WIZO95785 1651 aa43.63■■■■■ 4.58
LSM7-204ENST00000587502 NESP48681 1621 aa43.58■■■■■ 4.57
LSM7-204ENST00000587502 RSF1Q96T23 1441 aaPredicted RBP43.5■■■■■ 4.55
LSM7-204ENST00000587502 LAMC3Q9Y6N6 1575 aa43.5■■■■■ 4.55
LSM7-204ENST00000587502 CUX2O14529 1486 aa43.45■■■■■ 4.55
LSM7-204ENST00000587502 CADPSQ9ULU8 1353 aa43.29■■■■■ 4.52
LSM7-204ENST00000587502 PDS5BQ9NTI5 1447 aa43.27■■■■■ 4.52
LSM7-204ENST00000587502 TOP2AP11388 1531 aaKnown RBP43.19■■■■■ 4.5
LSM7-204ENST00000587502 THOC2Q8NI27 1593 aaKnown RBP43.04■■■■■ 4.48
LSM7-204ENST00000587502 KIF21AQ7Z4S6 1674 aa43.04■■■■■ 4.48
LSM7-204ENST00000587502 CFTRP13569 1480 aa42.89■■■■■ 4.46
LSM7-204ENST00000587502 MRC2Q9UBG0 1479 aa42.8■■■■■ 4.44
LSM7-204ENST00000587502 FANCD2Q9BXW9 1451 aa42.75■■■■■ 4.43
LSM7-204ENST00000587502 CEP164Q9UPV0 1460 aa42.75■■■■■ 4.43
LSM7-204ENST00000587502 CCDC88BA6NC98 1476 aa42.69■■■■■ 4.42
LSM7-204ENST00000587502 WDR62O43379 1518 aa42.65■■■■■ 4.42
LSM7-204ENST00000587502 PRDM2Q13029 1718 aa42.47■■■■■ 4.39
LSM7-204ENST00000587502 URB2Q14146 1524 aaKnown RBP42.3■■■■■ 4.36
LSM7-204ENST00000587502 ABCC8Q09428 1581 aa42.07■■■■■ 4.33
LSM7-204ENST00000587502 SUPT5HO00267 1087 aaKnown RBP42.03■■■■■ 4.32
LSM7-204ENST00000587502 TOPBP1Q92547 1522 aa42■■■■■ 4.31
LSM7-204ENST00000587502 DNMBPQ6XZF7 1577 aa41.91■■■■■ 4.3
LSM7-204ENST00000587502 IFT140Q96RY7 1462 aa41.91■■■■■ 4.3
LSM7-204ENST00000587502 ZNF608Q9ULD9 1512 aaPredicted RBP41.68■■■■■ 4.26
LSM7-204ENST00000587502 POLA1P09884 1462 aaPredicted RBP41.6■■■■■ 4.25
LSM7-204ENST00000587502 OSCARQ8IYS5 282 aa41.59■■■■■ 4.25
LSM7-204ENST00000587502 TARBP1Q13395 1621 aaKnown RBP41.55■■■■■ 4.24
LSM7-204ENST00000587502 EIF4G3O43432 1585 aaKnown RBP41.49■■■■■ 4.23
LSM7-204ENST00000587502 SOGA1O94964 1423 aa41.47■■■■■ 4.23
LSM7-204ENST00000587502 CUX1P39880 1505 aa41.46■■■■■ 4.23
LSM7-204ENST00000587502 TRIM41Q8WV44 630 aa41.44■■■■■ 4.22
LSM7-204ENST00000587502 FGD5Q6ZNL6 1462 aa41.41■■■■■ 4.22
LSM7-204ENST00000587502 AQRO60306 1485 aaKnown RBP eCLIP41.41■■■■■ 4.223e-7■■■■□ 21.6
LSM7-204ENST00000587502 RAD54L2Q9Y4B4 1467 aa41.4■■■■■ 4.22
LSM7-204ENST00000587502 WDR97A6NE52 1622 aa41.29■■■■■ 4.2
LSM7-204ENST00000587502 TDRD9Q8NDG6 1382 aaKnown RBP41.26■■■■■ 4.2
LSM7-204ENST00000587502 FBLN2P98095 1184 aa41.07■■■■■ 4.17
LSM7-204ENST00000587502 WRNQ14191 1432 aaPredicted RBP eCLIP41.06■■■■■ 4.16
LSM7-204ENST00000587502 GRIN2BQ13224 1484 aa41.04■■■■■ 4.16
LSM7-204ENST00000587502 CHD1O14646 1710 aa41.04■■■■■ 4.16
LSM7-204ENST00000587502 ABCA10Q8WWZ4 1543 aa41.03■■■■■ 4.16
LSM7-204ENST00000587502 SNAPC4Q5SXM2 1469 aa41.01■■■■■ 4.16
LSM7-204ENST00000587502 MAGI1Q96QZ7 1491 aaPredicted RBP41■■■■■ 4.15
LSM7-204ENST00000587502 TOP2BQ02880 1626 aa41■■■■■ 4.15
LSM7-204ENST00000587502 GAPVD1Q14C86 1478 aa40.97■■■■■ 4.15
LSM7-204ENST00000587502 BIVM-ERCC5R4GMW8 1640 aa40.97■■■■■ 4.15
LSM7-204ENST00000587502 CHMP7Q8WUX9 453 aaPredicted RBP40.91■■■■■ 4.14
LSM7-204ENST00000587502 SYNJ1O43426 1573 aa40.9■■■■■ 4.14
LSM7-204ENST00000587502 RIMBP3CA6NJZ7 1639 aa40.85■■■■■ 4.13
LSM7-204ENST00000587502 RIMBP3BA6NNM3 1639 aa40.85■■■■■ 4.13
LSM7-204ENST00000587502 ABCA5Q8WWZ7 1642 aa40.85■■■■■ 4.13
LSM7-204ENST00000587502 RIMBP3Q9UFD9 1639 aa40.85■■■■■ 4.13
LSM7-204ENST00000587502 PBRM1Q86U86 1689 aa40.84■■■■■ 4.13
LSM7-204ENST00000587502 SYNJ2O15056 1496 aa40.83■■■■■ 4.13
LSM7-204ENST00000587502 ARHGEF11O15085 1522 aa40.82■■■■■ 4.12
LSM7-204ENST00000587502 CLASP1Q7Z460 1538 aa40.62■■■■■ 4.09
LSM7-204ENST00000587502 ERICH3Q5RHP9 1530 aa40.54■■■■■ 4.08
LSM7-204ENST00000587502 CYB5RLQ6IPT4 315 aa40.52■■■■■ 4.08
LSM7-204ENST00000587502 ADAMTS12P58397 1594 aa40.5■■■■■ 4.07
LSM7-204ENST00000587502 FHAD1B1AJZ9 1412 aa40.5■■■■■ 4.07
LSM7-204ENST00000587502 GRIN2AQ12879 1464 aa40.48■■■■■ 4.07
LSM7-204ENST00000587502 ARAP1Q96P48 1450 aa40.44■■■■■ 4.06
LSM7-204ENST00000587502 NUP160Q12769 1436 aa40.33■■■■■ 4.05
LSM7-204ENST00000587502 KIF27Q86VH2 1401 aa40.28■■■■■ 4.04
LSM7-204ENST00000587502 CEP170Q5SW79 1584 aa40.25■■■■■ 4.03
LSM7-204ENST00000587502 IGF1RP08069 1367 aa40.15■■■■■ 4.02
LSM7-204ENST00000587502 SHROOM2Q13796 1616 aa40.05■■■■■ 4
LSM7-204ENST00000587502 CUL7Q14999 1698 aa40.05■■■■■ 4
LSM7-204ENST00000587502 JPH4Q96JJ6 628 aa39.97■■■■□ 3.99
LSM7-204ENST00000587502 ERCC6L2Q5T890 1561 aa39.96■■■■□ 3.99
LSM7-204ENST00000587502 CARMIL1Q5VZK9 1371 aa39.92■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms