Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.222e-7■■■■□ 26.1
LSM11P83369 ULK3-222ENST00000570276 2951 ntTSL 1 (best)16.26■□□□□ 0.192e-7■■■■□ 26.1
LSM11P83369 METTL26-211ENST00000568077 588 ntTSL 316.13■□□□□ 0.172e-7■■■■□ 26.1
LSM11P83369 ULK3-212ENST00000566479 2715 ntTSL 1 (best)16.01■□□□□ 0.152e-7■■■■□ 26.1
LSM11P83369 METTL26-207ENST00000456420 755 ntTSL 315.26■□□□□ 0.032e-7■■■■□ 26.1
LSM11P83369 METTL26-212ENST00000568773 499 ntTSL 215.19■□□□□ 0.022e-7■■■■□ 26.1
LSM11P83369 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.042e-7■■■■□ 26.1
LSM11P83369 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.78□□□□□ -0.042e-7■■■■□ 26.1
LSM11P83369 METTL26-208ENST00000564039 518 ntTSL 214.72□□□□□ -0.052e-7■■■■□ 26.1
LSM11P83369 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.44□□□□□ -0.12e-7■■■■□ 26.1
LSM11P83369 ULK3-202ENST00000561725 2738 ntTSL 514.22□□□□□ -0.132e-7■■■■□ 26.1
LSM11P83369 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.91□□□□□ -0.182e-7■■■■□ 26.1
LSM11P83369 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.5□□□□□ -0.252e-7■■■■□ 26.1
LSM11P83369 GGCX-206ENST00000465637 563 ntTSL 412.1□□□□□ -0.472e-7■■■■□ 26.1
LSM11P83369 TROAP-201ENST00000257909 2527 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.682e-7■■■■□ 26.1
LSM11P83369 TROAP-215ENST00000551245 2771 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.72e-7■■■■□ 26.1
LSM11P83369 GGCX-205ENST00000430215 2314 ntTSL 2 BASIC9.21□□□□□ -0.942e-7■■■■□ 26.1
LSM11P83369 TROAP-206ENST00000547923 1652 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.992e-7■■■■□ 26.1
LSM11P83369 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.272e-7■■■■□ 26.1
LSM11P83369 TMEM50B-201ENST00000420455 3062 ntTSL 1 (best)12.4□□□□□ -0.425e-7■■■■□ 26.1
LSM11P83369 TMEM50B-209ENST00000484377 695 ntTSL 211.16□□□□□ -0.625e-7■■■■□ 26.1
LSM11P83369 CTBP1-214ENST00000514495 564 ntTSL 223.91■■□□□ 1.424e-8■■■■□ 26.1
LSM11P83369 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.86■■□□□ 1.414e-8■■■■□ 26.1
LSM11P83369 PRKRIP1-207ENST00000482549 1625 ntTSL 1 (best)23.34■■□□□ 1.331e-10■■■■□ 26.1
LSM11P83369 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.064e-8■■■■□ 26.1
LSM11P83369 PRKRIP1-204ENST00000469763 1642 ntTSL 521.43■■□□□ 1.021e-10■■■■□ 26.1
LSM11P83369 IZUMO4-207ENST00000498554 929 ntTSL 519.99■□□□□ 0.794e-8■■■■□ 26.1
LSM11P83369 CTBP1-217ENST00000515399 985 ntTSL 317.25■□□□□ 0.354e-8■■■■□ 26.1
LSM11P83369 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.281e-10■■■■□ 26.1
LSM11P83369 CTBP1-208ENST00000506180 843 ntTSL 515.91■□□□□ 0.144e-8■■■■□ 26.1
LSM11P83369 PRKRIP1-206ENST00000482465 2257 ntTSL 214.83□□□□□ -0.031e-10■■■■□ 26.1
LSM11P83369 PRKRIP1-203ENST00000468316 2045 ntTSL 1 (best)14.67□□□□□ -0.061e-10■■■■□ 26.1
LSM11P83369 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.111e-10■■■■□ 26.1
LSM11P83369 CTBP1-213ENST00000514210 856 ntTSL 213.34□□□□□ -0.274e-8■■■■□ 26.1
LSM11P83369 CTBP1-212ENST00000513420 704 ntTSL 312.81□□□□□ -0.364e-8■■■■□ 26.1
LSM11P83369 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC11.49□□□□□ -0.571e-10■■■■□ 26.1
LSM11P83369 IZUMO4-208ENST00000588003 510 ntTSL 311.36□□□□□ -0.594e-8■■■■□ 26.1
LSM11P83369 LUC7L-212ENST00000443357 833 ntTSL 210.52□□□□□ -0.734e-8■■■■□ 26.1
LSM11P83369 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC9.15□□□□□ -0.946e-7■■■■□ 26.1
LSM11P83369 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.096e-7■■■■□ 26.1
LSM11P83369 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC8.21□□□□□ -1.096e-7■■■■□ 26.1
LSM11P83369 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC8□□□□□ -1.136e-7■■■■□ 26.1
LSM11P83369 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC7.54□□□□□ -1.24e-8■■■■□ 26.1
LSM11P83369 OSGEP-204ENST00000554249 987 ntTSL 28.42□□□□□ -1.069e-7■■■■□ 26.1
LSM11P83369 RNF126-207ENST00000605891 1671 ntTSL 527.81■■■□□ 2.041e-6■■■■□ 26.1
LSM11P83369 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.731e-6■■■■□ 26.1
LSM11P83369 RNF126-203ENST00000589762 963 ntTSL 223.83■■□□□ 1.411e-6■■■■□ 26.1
LSM11P83369 RNF126-205ENST00000591394 733 ntTSL 219.76■□□□□ 0.751e-6■■■■□ 26.1
LSM11P83369 RNF126-206ENST00000592626 652 ntTSL 216.28■□□□□ 0.21e-6■■■■□ 26.1
LSM11P83369 CPSF6-205ENST00000550075 540 ntTSL 422.72■■□□□ 1.235e-21■■■■□ 26
LSM11P83369 ST3GAL1-202ENST00000517668 665 ntTSL 516.84■□□□□ 0.295e-11■■■■□ 26
LSM11P83369 ST3GAL1-204ENST00000519435 1050 ntTSL 312.42□□□□□ -0.425e-11■■■■□ 26
LSM11P83369 ST3GAL1-211ENST00000522652 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.645e-11■■■■□ 26
LSM11P83369 ST3GAL1-212ENST00000522873 613 ntTSL 310.57□□□□□ -0.725e-11■■■■□ 26
LSM11P83369 ST3GAL1-207ENST00000521180 6951 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.865e-11■■■■□ 26
LSM11P83369 CPSF6-206ENST00000550987 560 ntTSL 48.96□□□□□ -0.985e-21■■■■□ 26
LSM11P83369 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC8.93□□□□□ -0.985e-11■■■■□ 26
LSM11P83369 ST3GAL1-201ENST00000399640 6764 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.035e-11■■■■□ 26
LSM11P83369 ST3GAL1-203ENST00000518298 921 ntTSL 1 (best)8.4□□□□□ -1.065e-11■■■■□ 26
LSM11P83369 ITCH-205ENST00000483727 1070 ntTSL 58.25□□□□□ -1.095e-11■■■■□ 26
LSM11P83369 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.315e-11■■■■□ 26
LSM11P83369 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.21□□□□□ -1.585e-11■■■■□ 26
LSM11P83369 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.03□□□□□ -1.65e-11■■■■□ 26
LSM11P83369 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.26□□□□□ -1.735e-11■■■■□ 26
LSM11P83369 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.745e-11■■■■□ 26
LSM11P83369 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.347e-8■■■■□ 26
LSM11P83369 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.37e-8■■■■□ 26
LSM11P83369 RAVER1-204ENST00000592208 4693 ntTSL 1 (best)12.8□□□□□ -0.367e-8■■■■□ 26
LSM11P83369 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.537e-8■■■■□ 26
LSM11P83369 RAVER1-205ENST00000593136 500 ntTSL 511.71□□□□□ -0.537e-8■■■■□ 26
LSM11P83369 RAVER1-208ENST00000617231 3501 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.77e-8■■■■□ 26
LSM11P83369 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.79□□□□□ -1.168e-11■■■■□ 25.9
LSM11P83369 LINC01033-203ENST00000517934 306 ntTSL 23.27□□□□□ -1.898e-11■■■■□ 25.9
LSM11P83369 GTF2I-213ENST00000613513 538 ntTSL 416.99■□□□□ 0.313e-10■■■■□ 25.9
LSM11P83369 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC12.66□□□□□ -0.383e-10■■■■□ 25.9
LSM11P83369 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.196e-7■■■■□ 25.9
LSM11P83369 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.56■□□□□ 0.082e-13■■■■□ 25.8
LSM11P83369 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.35■□□□□ 0.052e-13■■■■□ 25.8
LSM11P83369 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.062e-13■■■■□ 25.8
LSM11P83369 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.122e-13■■■■□ 25.8
LSM11P83369 TBRG4-217ENST00000495973 3409 ntTSL 1 (best)10.56□□□□□ -0.722e-13■■■■□ 25.8
LSM11P83369 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.82■□□□□ 0.282e-7■■■■□ 25.8
LSM11P83369 CENPU-205ENST00000510146 1549 ntTSL 1 (best)19.33■□□□□ 0.682e-7■■■■□ 25.8
LSM11P83369 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.672e-7■■■■□ 25.8
LSM11P83369 CENPU-202ENST00000502461 723 ntTSL 214.63□□□□□ -0.072e-7■■■■□ 25.8
LSM11P83369 ZFPM1-202ENST00000562417 497 ntTSL 315.53■□□□□ 0.086e-7■■■■□ 25.7
LSM11P83369 CAPN15-207ENST00000568988 911 ntTSL 323.45■■□□□ 1.346e-7■■■■□ 25.7
LSM11P83369 CAPN15-202ENST00000562370 942 ntTSL 223.45■■□□□ 1.346e-7■■■■□ 25.7
LSM11P83369 CDC45-212ENST00000493724 469 ntTSL 211.47□□□□□ -0.572e-6■■■■□ 25.6
LSM11P83369 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC11.09□□□□□ -0.631e-8■■■■□ 25.5
LSM11P83369 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC7.63□□□□□ -1.191e-8■■■■□ 25.5
LSM11P83369 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.688e-8■■■■□ 25.5
LSM11P83369 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.288e-8■■■■□ 25.5
LSM11P83369 AFF4-206ENST00000465484 1729 ntTSL 1 (best)15.99■□□□□ 0.155e-9■■■■□ 25.5
LSM11P83369 RNF215-201ENST00000215798 1651 ntAPPRIS ALT2 TSL 515.76■□□□□ 0.118e-8■■■■□ 25.5
LSM11P83369 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.078e-8■■■■□ 25.5
LSM11P83369 AFF4-209ENST00000491831 1667 ntTSL 1 (best)15.32■□□□□ 0.045e-9■■■■□ 25.5
LSM11P83369 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.55□□□□□ -0.088e-8■■■■□ 25.5
LSM11P83369 CSAD-213ENST00000475890 2080 ntTSL 513.82□□□□□ -0.28e-8■■■■□ 25.5
LSM11P83369 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.58□□□□□ -0.248e-8■■■■□ 25.5
Retrieved 100 of 11,495 protein–RNA pairs in 57.9 ms