RNA–Protein interactions for RNA: ENST00000550987.5

CPSF6-206, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-206ENST00000550987 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
CPSF6-206ENST00000550987 AEBP2Q6ZN18 517 aaPredicted RBP20.02■□□□□ 0.8
CPSF6-206ENST00000550987 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
CPSF6-206ENST00000550987 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
CPSF6-206ENST00000550987 PLPPR3Q6T4P5 718 aa16.77■□□□□ 0.28
CPSF6-206ENST00000550987 ADRA2BP18089 450 aa15.65■□□□□ 0.1
CPSF6-206ENST00000550987 FOXD1Q16676 465 aa15.63■□□□□ 0.09
CPSF6-206ENST00000550987 PPP6R1Q9UPN7 881 aa15.54■□□□□ 0.08
CPSF6-206ENST00000550987 KCNA4P22459 653 aa15.22■□□□□ 0.03
CPSF6-206ENST00000550987 EHMT2Q96KQ7 1210 aa15.03■□□□□ -0
CPSF6-206ENST00000550987 PIAS4Q8N2W9 510 aaPredicted RBP14.97□□□□□ -0.01
CPSF6-206ENST00000550987 PPP4R3CPQ6ZMV5 832 aa14.85□□□□□ -0.03
CPSF6-206ENST00000550987 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
CPSF6-206ENST00000550987 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
CPSF6-206ENST00000550987 CSRNP3Q8WYN3 585 aa14.46□□□□□ -0.09
CPSF6-206ENST00000550987 NPM3O75607 178 aaKnown RBP14.4□□□□□ -0.1
CPSF6-206ENST00000550987 SCAF1Q9H7N4 1312 aaKnown RBP14.38□□□□□ -0.11
CPSF6-206ENST00000550987 CNKSR2Q8WXI2 1034 aa14.3□□□□□ -0.12
CPSF6-206ENST00000550987 MSH5O43196 834 aa14.21□□□□□ -0.13
CPSF6-206ENST00000550987 MAPK8IP2Q13387 824 aaPredicted RBP13.98□□□□□ -0.17
CPSF6-206ENST00000550987 ZBTB22O15209 634 aa13.95□□□□□ -0.18
CPSF6-206ENST00000550987 FOXD4L1Q9NU39 408 aa13.84□□□□□ -0.19
CPSF6-206ENST00000550987 RNF216Q9NWF9 866 aaPredicted RBP13.83□□□□□ -0.2
CPSF6-206ENST00000550987 DNAJC5BQ9UF47 199 aa13.77□□□□□ -0.21
CPSF6-206ENST00000550987 DMRT2Q9Y5R5 561 aa13.61□□□□□ -0.23
CPSF6-206ENST00000550987 HOXD11P31277 338 aaPredicted RBP13.56□□□□□ -0.24
CPSF6-206ENST00000550987 SLC4A2P04920 1241 aa13.41□□□□□ -0.26
CPSF6-206ENST00000550987 MYCNP04198 464 aaPredicted RBP13.32□□□□□ -0.28
CPSF6-206ENST00000550987 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
CPSF6-206ENST00000550987 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
CPSF6-206ENST00000550987 FKBP8Q14318 412 aa13.11□□□□□ -0.31
CPSF6-206ENST00000550987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.08□□□□□ -0.327e-7■□□□□ 11
CPSF6-206ENST00000550987 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-206ENST00000550987 RTN4Q9NQC3 1192 aaKnown RBP13.03□□□□□ -0.32
CPSF6-206ENST00000550987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.98□□□□□ -0.33
CPSF6-206ENST00000550987 HNRNPUL2Q1KMD3 747 aaKnown RBP12.98□□□□□ -0.33
CPSF6-206ENST00000550987 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
CPSF6-206ENST00000550987 ATF5Q9Y2D1 282 aaPredicted RBP12.87□□□□□ -0.35
CPSF6-206ENST00000550987 SLC24A1O60721 1099 aa12.86□□□□□ -0.35
CPSF6-206ENST00000550987 U3KPZ7 1027 aaPredicted RBP12.82□□□□□ -0.36
CPSF6-206ENST00000550987 APLP2Q06481 763 aa12.71□□□□□ -0.37
CPSF6-206ENST00000550987 ZNF219Q9P2Y4 722 aaPredicted RBP12.66□□□□□ -0.38
CPSF6-206ENST00000550987 FBXO3Q9UK99 471 aa12.49□□□□□ -0.41
CPSF6-206ENST00000550987 SPDYE4A6NLX3 237 aa12.47□□□□□ -0.41
CPSF6-206ENST00000550987 FBLN2P98095 1184 aa12.42□□□□□ -0.42
CPSF6-206ENST00000550987 TRHP20396 242 aaPredicted RBP12.41□□□□□ -0.42
CPSF6-206ENST00000550987 DNAJC5Q9H3Z4 198 aa12.4□□□□□ -0.42
CPSF6-206ENST00000550987 MKRN4PQ13434 485 aaPredicted RBP12.33□□□□□ -0.44
CPSF6-206ENST00000550987 POLA2Q14181 598 aa12.32□□□□□ -0.44
CPSF6-206ENST00000550987 CAPN15O75808 1086 aa12.31□□□□□ -0.44
CPSF6-206ENST00000550987 SPINK5Q9NQ38 1064 aaPredicted RBP12.29□□□□□ -0.44
CPSF6-206ENST00000550987 VASPP50552 380 aaPredicted RBP12.24□□□□□ -0.45
CPSF6-206ENST00000550987 PROM2Q8N271 834 aa12.19□□□□□ -0.46
CPSF6-206ENST00000550987 RNF39Q9H2S5 420 aa12.19□□□□□ -0.46
CPSF6-206ENST00000550987 DCAF8L2P0C7V8 631 aa12.15□□□□□ -0.46
CPSF6-206ENST00000550987 ZBTB12Q9Y330 459 aaPredicted RBP12.15□□□□□ -0.46
CPSF6-206ENST00000550987 C1QBPQ07021 282 aaKnown RBP12.13□□□□□ -0.47
CPSF6-206ENST00000550987 ABCB7O75027 752 aa12.1□□□□□ -0.47
CPSF6-206ENST00000550987 IFNLR1Q8IU57 520 aaPredicted RBP12.1□□□□□ -0.47
CPSF6-206ENST00000550987 PLCB2Q00722 1185 aa12.03□□□□□ -0.48
CPSF6-206ENST00000550987 KLHL34Q8N239 644 aa12.02□□□□□ -0.49
CPSF6-206ENST00000550987 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
CPSF6-206ENST00000550987 HAP1P54257 671 aaPredicted RBP11.96□□□□□ -0.49
CPSF6-206ENST00000550987 PKD2Q13563 968 aa11.93□□□□□ -0.5
CPSF6-206ENST00000550987 SPOCK2Q92563 424 aa11.92□□□□□ -0.5
CPSF6-206ENST00000550987 STAG3Q9UJ98 1225 aa11.92□□□□□ -0.5
CPSF6-206ENST00000550987 PLCD3Q8N3E9 789 aa11.89□□□□□ -0.51
CPSF6-206ENST00000550987 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
CPSF6-206ENST00000550987 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
CPSF6-206ENST00000550987 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
CPSF6-206ENST00000550987 DSG3P32926 999 aa11.84□□□□□ -0.51
CPSF6-206ENST00000550987 ECM2O94769 699 aaPredicted RBP11.83□□□□□ -0.52
CPSF6-206ENST00000550987 OSCARQ8IYS5 282 aa11.83□□□□□ -0.52
CPSF6-206ENST00000550987 MIER1Q8N108 512 aa11.83□□□□□ -0.52
CPSF6-206ENST00000550987 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.81□□□□□ -0.52
CPSF6-206ENST00000550987 PABPN1Q86U42 306 aaKnown RBP eCLIP11.8□□□□□ -0.52
CPSF6-206ENST00000550987 POTEDQ86YR6 584 aa11.77□□□□□ -0.53
CPSF6-206ENST00000550987 PLEKHG5O94827 1062 aa11.76□□□□□ -0.53
CPSF6-206ENST00000550987 SSUH2Q9Y2M2 353 aa11.76□□□□□ -0.53
CPSF6-206ENST00000550987 BBXQ8WY36 941 aaPredicted RBP11.74□□□□□ -0.53
CPSF6-206ENST00000550987 VSIG10Q8N0Z9 540 aa11.73□□□□□ -0.53
CPSF6-206ENST00000550987 BCANQ96GW7 911 aa11.7□□□□□ -0.54
CPSF6-206ENST00000550987 PAXIP1Q6ZW49 1069 aaPredicted RBP11.68□□□□□ -0.54
CPSF6-206ENST00000550987 CFAP44Q96MT7 982 aa11.68□□□□□ -0.54
CPSF6-206ENST00000550987 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
CPSF6-206ENST00000550987 CIZ1Q9ULV3 898 aaPredicted RBP11.68□□□□□ -0.54
CPSF6-206ENST00000550987 RGL2O15211 777 aa11.63□□□□□ -0.55
CPSF6-206ENST00000550987 NPM1P06748 294 aaKnown RBP eCLIP11.63□□□□□ -0.55
CPSF6-206ENST00000550987 SPRYD3Q8NCJ5 442 aa11.59□□□□□ -0.55
CPSF6-206ENST00000550987 CHGAP10645 457 aaKnown RBP11.56□□□□□ -0.56
CPSF6-206ENST00000550987 CACNB1Q02641 598 aaPredicted RBP11.52□□□□□ -0.57
CPSF6-206ENST00000550987 TRIM41Q8WV44 630 aa11.52□□□□□ -0.57
CPSF6-206ENST00000550987 KDM2AQ9Y2K7 1162 aa11.51□□□□□ -0.57
CPSF6-206ENST00000550987 ABCC9O60706 1549 aa11.46□□□□□ -0.57
CPSF6-206ENST00000550987 GSE1Q14687 1217 aa11.46□□□□□ -0.57
CPSF6-206ENST00000550987 TAOK2Q9UL54 1235 aa11.46□□□□□ -0.57
CPSF6-206ENST00000550987 TSHZ2Q9NRE2 1034 aa11.45□□□□□ -0.58
CPSF6-206ENST00000550987 PRKCSHP14314 528 aaPredicted RBP11.44□□□□□ -0.58
CPSF6-206ENST00000550987 DCAF8Q5TAQ9 597 aa11.42□□□□□ -0.58
CPSF6-206ENST00000550987 SPDYE1Q8NFV5 336 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms