Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AL035456.1-201ENST00000456064 1369 ntBASIC16.13■□□□□ 0.17
SRP54P61011 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.13■□□□□ 0.17
SRP54P61011 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SRP54P61011 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.13■□□□□ 0.17
SRP54P61011 AC241585.1-201ENST00000433527 519 ntBASIC16.13■□□□□ 0.17
SRP54P61011 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.13■□□□□ 0.17
SRP54P61011 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.13■□□□□ 0.17
SRP54P61011 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SRP54P61011 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.13■□□□□ 0.17
SRP54P61011 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SRP54P61011 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SRP54P61011 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 TSPY16P-201ENST00000449843 468 ntBASIC16.12■□□□□ 0.17
SRP54P61011 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.12■□□□□ 0.17
SRP54P61011 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 SPDYE12P-201ENST00000618416 771 ntBASIC16.12■□□□□ 0.17
SRP54P61011 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.12■□□□□ 0.17
SRP54P61011 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SRP54P61011 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SRP54P61011 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SRP54P61011 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SRP54P61011 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SRP54P61011 UGT1A2P-201ENST00000454886 866 ntBASIC16.11■□□□□ 0.17
SRP54P61011 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.11■□□□□ 0.17
SRP54P61011 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.11■□□□□ 0.17
SRP54P61011 AC138761.1-201ENST00000584393 385 ntBASIC16.11■□□□□ 0.17
SRP54P61011 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.11■□□□□ 0.17
SRP54P61011 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.11■□□□□ 0.17
SRP54P61011 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms