RNA–Protein interactions for RNA: ENST00000571976.1

LITAF-210, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 2 BASIC

Gene LITAF, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-210ENST00000571976 NISCHQ9Y2I1 1504 aa39.06■■■■□ 3.84
LITAF-210ENST00000571976 CCDC180Q9P1Z9 1646 aa34.66■■■■□ 3.14
LITAF-210ENST00000571976 ABCC9O60706 1549 aa33.84■■■■□ 3.01
LITAF-210ENST00000571976 DCAF8L2P0C7V8 631 aa32.64■■■□□ 2.82
LITAF-210ENST00000571976 RB1CC1Q8TDY2 1594 aa32.61■■■□□ 2.81
LITAF-210ENST00000571976 NACADO15069 1562 aa32.6■■■□□ 2.81
LITAF-210ENST00000571976 ZCCHC6Q5VYS8 1495 aaKnown RBP32.54■■■□□ 2.8
LITAF-210ENST00000571976 MYO15BQ96JP2 1530 aa32.45■■■□□ 2.78
LITAF-210ENST00000571976 DCAF1Q9Y4B6 1507 aa32.34■■■□□ 2.77
LITAF-210ENST00000571976 UNC13AQ9UPW8 1703 aa31.81■■■□□ 2.68
LITAF-210ENST00000571976 PABPN1Q86U42 306 aaKnown RBP eCLIP31.66■■■□□ 2.66
LITAF-210ENST00000571976 SCRIBQ14160 1630 aa31.62■■■□□ 2.65
LITAF-210ENST00000571976 BICRAQ9NZM4 1560 aa31.59■■■□□ 2.65
LITAF-210ENST00000571976 SHROOM4Q9ULL8 1493 aa31.31■■■□□ 2.6
LITAF-210ENST00000571976 DNAJC5BQ9UF47 199 aa30.98■■■□□ 2.55
LITAF-210ENST00000571976 EIF4G1Q04637 1599 aaKnown RBP30.76■■■□□ 2.52
LITAF-210ENST00000571976 CC2D2AQ9P2K1 1620 aa30.6■■■□□ 2.49
LITAF-210ENST00000571976 CECR2Q9BXF3 1484 aa30.41■■■□□ 2.46
LITAF-210ENST00000571976 BAZ1AQ9NRL2 1556 aaPredicted RBP30.28■■■□□ 2.44
LITAF-210ENST00000571976 SMARCA4P51532 1647 aa30.26■■■□□ 2.44
LITAF-210ENST00000571976 ATAD2BQ9ULI0 1458 aa30.1■■■□□ 2.41
LITAF-210ENST00000571976 NCAPD3P42695 1498 aa30.09■■■□□ 2.41
LITAF-210ENST00000571976 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
LITAF-210ENST00000571976 SMARCA2P51531 1590 aa30.07■■■□□ 2.4
LITAF-210ENST00000571976 PEG3Q9GZU2 1588 aa29.98■■■□□ 2.39
LITAF-210ENST00000571976 HMGXB3Q12766 1538 aa29.92■■■□□ 2.38
LITAF-210ENST00000571976 BAZ1BQ9UIG0 1483 aaKnown RBP29.86■■■□□ 2.37
LITAF-210ENST00000571976 RSF1Q96T23 1441 aaPredicted RBP29.8■■■□□ 2.36
LITAF-210ENST00000571976 WIZO95785 1651 aa29.76■■■□□ 2.35
LITAF-210ENST00000571976 TOP2AP11388 1531 aaKnown RBP29.46■■■□□ 2.31
LITAF-210ENST00000571976 NESP48681 1621 aa29.3■■■□□ 2.28
LITAF-210ENST00000571976 LAMC3Q9Y6N6 1575 aa29.27■■■□□ 2.28
LITAF-210ENST00000571976 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
LITAF-210ENST00000571976 ERCC6Q03468 1493 aa29.18■■■□□ 2.26
LITAF-210ENST00000571976 SUPT5HO00267 1087 aaKnown RBP29.13■■■□□ 2.25
LITAF-210ENST00000571976 CCDC88BA6NC98 1476 aa29.12■■■□□ 2.25
LITAF-210ENST00000571976 PDS5BQ9NTI5 1447 aa29.1■■■□□ 2.25
LITAF-210ENST00000571976 CFTRP13569 1480 aa29.05■■■□□ 2.24
LITAF-210ENST00000571976 KIF21AQ7Z4S6 1674 aa28.93■■■□□ 2.22
LITAF-210ENST00000571976 FANCD2Q9BXW9 1451 aa28.87■■■□□ 2.21
LITAF-210ENST00000571976 CUX2O14529 1486 aa28.85■■■□□ 2.21
LITAF-210ENST00000571976 CEP164Q9UPV0 1460 aa28.83■■■□□ 2.21
LITAF-210ENST00000571976 THOC2Q8NI27 1593 aaKnown RBP28.82■■■□□ 2.2
LITAF-210ENST00000571976 PRDM2Q13029 1718 aa28.79■■■□□ 2.2
LITAF-210ENST00000571976 MRC2Q9UBG0 1479 aa28.76■■■□□ 2.19
LITAF-210ENST00000571976 WDR62O43379 1518 aa28.65■■■□□ 2.18
LITAF-210ENST00000571976 URB2Q14146 1524 aaKnown RBP28.55■■■□□ 2.16
LITAF-210ENST00000571976 ABCC8Q09428 1581 aa28.45■■■□□ 2.15
LITAF-210ENST00000571976 TOPBP1Q92547 1522 aa28.41■■■□□ 2.14
LITAF-210ENST00000571976 DNMBPQ6XZF7 1577 aa28.37■■■□□ 2.13
LITAF-210ENST00000571976 IFT140Q96RY7 1462 aa28.23■■■□□ 2.11
LITAF-210ENST00000571976 CUX1P39880 1505 aa28.22■■■□□ 2.11
LITAF-210ENST00000571976 POLA1P09884 1462 aaPredicted RBP28.17■■■□□ 2.1
LITAF-210ENST00000571976 FGD5Q6ZNL6 1462 aa28.11■■■□□ 2.09
LITAF-210ENST00000571976 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
LITAF-210ENST00000571976 SOGA1O94964 1423 aa28.09■■■□□ 2.09
LITAF-210ENST00000571976 TARBP1Q13395 1621 aaKnown RBP28.08■■■□□ 2.09
LITAF-210ENST00000571976 ZNF608Q9ULD9 1512 aaPredicted RBP28.06■■■□□ 2.08
LITAF-210ENST00000571976 RAD54L2Q9Y4B4 1467 aa28.04■■■□□ 2.08
LITAF-210ENST00000571976 TOP2BQ02880 1626 aa28.01■■■□□ 2.07
LITAF-210ENST00000571976 BIVM-ERCC5R4GMW8 1640 aa28■■■□□ 2.07
LITAF-210ENST00000571976 SYNJ1O43426 1573 aa27.99■■■□□ 2.07
LITAF-210ENST00000571976 EIF4G3O43432 1585 aaKnown RBP27.94■■■□□ 2.06
LITAF-210ENST00000571976 AQRO60306 1485 aaKnown RBP eCLIP27.93■■■□□ 2.062e-8■■■□□ 18.1
LITAF-210ENST00000571976 TDRD9Q8NDG6 1382 aaKnown RBP27.91■■■□□ 2.06
LITAF-210ENST00000571976 WDR97A6NE52 1622 aa27.89■■■□□ 2.06
LITAF-210ENST00000571976 DNAJC5Q9H3Z4 198 aa27.88■■■□□ 2.05
LITAF-210ENST00000571976 ABCA10Q8WWZ4 1543 aa27.86■■■□□ 2.05
LITAF-210ENST00000571976 GAPVD1Q14C86 1478 aa27.76■■■□□ 2.03
LITAF-210ENST00000571976 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
LITAF-210ENST00000571976 ABCA5Q8WWZ7 1642 aa27.71■■■□□ 2.03
LITAF-210ENST00000571976 OSCARQ8IYS5 282 aa27.71■■■□□ 2.03
LITAF-210ENST00000571976 SNAPC4Q5SXM2 1469 aa27.67■■■□□ 2.02
LITAF-210ENST00000571976 MAGI1Q96QZ7 1491 aaPredicted RBP27.65■■■□□ 2.02
LITAF-210ENST00000571976 PBRM1Q86U86 1689 aa27.64■■■□□ 2.02
LITAF-210ENST00000571976 FBLN2P98095 1184 aa27.61■■■□□ 2.01
LITAF-210ENST00000571976 CHMP7Q8WUX9 453 aaPredicted RBP27.57■■■□□ 2
LITAF-210ENST00000571976 CHD1O14646 1710 aa27.56■■■□□ 2
LITAF-210ENST00000571976 SYNJ2O15056 1496 aa27.55■■■□□ 2
LITAF-210ENST00000571976 ERICH3Q5RHP9 1530 aa27.53■■■□□ 2
LITAF-210ENST00000571976 TRIM41Q8WV44 630 aa27.53■■■□□ 2
LITAF-210ENST00000571976 KIF27Q86VH2 1401 aa27.52■■■□□ 2
LITAF-210ENST00000571976 FHAD1B1AJZ9 1412 aa27.45■■□□□ 1.98
LITAF-210ENST00000571976 ADAMTS12P58397 1594 aa27.44■■□□□ 1.98
LITAF-210ENST00000571976 IGF1RP08069 1367 aa27.4■■□□□ 1.98
LITAF-210ENST00000571976 GRIN2AQ12879 1464 aa27.37■■□□□ 1.97
LITAF-210ENST00000571976 CLASP1Q7Z460 1538 aa27.29■■□□□ 1.96
LITAF-210ENST00000571976 CUL7Q14999 1698 aa27.29■■□□□ 1.96
LITAF-210ENST00000571976 RUSC2Q8N2Y8 1516 aa27.26■■□□□ 1.95
LITAF-210ENST00000571976 NUP160Q12769 1436 aa27.25■■□□□ 1.95
LITAF-210ENST00000571976 CHIC1Q5VXU3 224 aa27.24■■□□□ 1.95
LITAF-210ENST00000571976 CARMIL1Q5VZK9 1371 aa27.23■■□□□ 1.95
LITAF-210ENST00000571976 CEP170Q5SW79 1584 aa27.21■■□□□ 1.95
LITAF-210ENST00000571976 ARHGEF11O15085 1522 aa27.2■■□□□ 1.94
LITAF-210ENST00000571976 RIMBP3CA6NJZ7 1639 aa27.18■■□□□ 1.94
LITAF-210ENST00000571976 RIMBP3BA6NNM3 1639 aa27.18■■□□□ 1.94
LITAF-210ENST00000571976 RIMBP3Q9UFD9 1639 aa27.18■■□□□ 1.94
LITAF-210ENST00000571976 RAPGEF2Q9Y4G8 1499 aa27.07■■□□□ 1.92
LITAF-210ENST00000571976 EEA1Q15075 1411 aa27.06■■□□□ 1.92
LITAF-210ENST00000571976 CSRNP3Q8WYN3 585 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms