RNA–Protein interactions for RNA: ENST00000312438.7

CLCF1-201, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCF1, Length 1,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-201ENST00000312438 NISCHQ9Y2I1 1504 aa37.47■■■■□ 3.59
CLCF1-201ENST00000312438 CCDC180Q9P1Z9 1646 aa32.49■■■□□ 2.79
CLCF1-201ENST00000312438 ZCCHC6Q5VYS8 1495 aaKnown RBP31.48■■■□□ 2.63
CLCF1-201ENST00000312438 DCAF8L2P0C7V8 631 aa31.07■■■□□ 2.56
CLCF1-201ENST00000312438 DCAF1Q9Y4B6 1507 aa30.98■■■□□ 2.55
CLCF1-201ENST00000312438 ABCC9O60706 1549 aa30.75■■■□□ 2.51
CLCF1-201ENST00000312438 SHROOM4Q9ULL8 1493 aa30.69■■■□□ 2.5
CLCF1-201ENST00000312438 MYO15BQ96JP2 1530 aa30.58■■■□□ 2.49
CLCF1-201ENST00000312438 NACADO15069 1562 aa30.34■■■□□ 2.45
CLCF1-201ENST00000312438 RB1CC1Q8TDY2 1594 aa30.03■■■□□ 2.4
CLCF1-201ENST00000312438 SCRIBQ14160 1630 aa29.93■■■□□ 2.38
CLCF1-201ENST00000312438 SUPT5HO00267 1087 aaKnown RBP29.66■■■□□ 2.34
CLCF1-201ENST00000312438 UNC13AQ9UPW8 1703 aa29.25■■■□□ 2.27
CLCF1-201ENST00000312438 RSF1Q96T23 1441 aaPredicted RBP29.16■■■□□ 2.26
CLCF1-201ENST00000312438 CECR2Q9BXF3 1484 aa29.12■■■□□ 2.25
CLCF1-201ENST00000312438 PABPN1Q86U42 306 aaKnown RBP eCLIP29.1■■■□□ 2.25
CLCF1-201ENST00000312438 BICRAQ9NZM4 1560 aa29.09■■■□□ 2.25
CLCF1-201ENST00000312438 MROH2BQ7Z745 1585 aa28.94■■■□□ 2.22
CLCF1-201ENST00000312438 BAZ1AQ9NRL2 1556 aaPredicted RBP28.91■■■□□ 2.22
CLCF1-201ENST00000312438 SMARCA4P51532 1647 aa28.71■■■□□ 2.19
CLCF1-201ENST00000312438 WIZO95785 1651 aa28.65■■■□□ 2.18
CLCF1-201ENST00000312438 CHIC1Q5VXU3 224 aa28.46■■■□□ 2.15
CLCF1-201ENST00000312438 TOP2AP11388 1531 aaKnown RBP28.39■■■□□ 2.14
CLCF1-201ENST00000312438 PEG3Q9GZU2 1588 aa28.38■■■□□ 2.13
CLCF1-201ENST00000312438 ATAD2BQ9ULI0 1458 aa28.3■■■□□ 2.12
CLCF1-201ENST00000312438 SMARCA2P51531 1590 aa28.26■■■□□ 2.11
CLCF1-201ENST00000312438 EIF4G1Q04637 1599 aaKnown RBP28.23■■■□□ 2.11
CLCF1-201ENST00000312438 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
CLCF1-201ENST00000312438 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
CLCF1-201ENST00000312438 NCAPD3P42695 1498 aa28.07■■■□□ 2.08
CLCF1-201ENST00000312438 HMGXB3Q12766 1538 aa27.95■■■□□ 2.06
CLCF1-201ENST00000312438 TRIM41Q8WV44 630 aa27.91■■■□□ 2.06
CLCF1-201ENST00000312438 CC2D2AQ9P2K1 1620 aa27.77■■■□□ 2.04
CLCF1-201ENST00000312438 ABCC8Q09428 1581 aa27.54■■■□□ 2
CLCF1-201ENST00000312438 CFTRP13569 1480 aa27.46■■□□□ 1.99
CLCF1-201ENST00000312438 WRNQ14191 1432 aaPredicted RBP eCLIP27.44■■□□□ 1.98
CLCF1-201ENST00000312438 LOC105371045A0A1W2PR82 267 aa27.39■■□□□ 1.97
CLCF1-201ENST00000312438 CADPSQ9ULU8 1353 aa27.38■■□□□ 1.97
CLCF1-201ENST00000312438 FAM9AQ8IZU1 332 aaPredicted RBP27.37■■□□□ 1.97
CLCF1-201ENST00000312438 SYNJ1O43426 1573 aa27.22■■□□□ 1.95
CLCF1-201ENST00000312438 DNAJC5BQ9UF47 199 aa27.14■■□□□ 1.94
CLCF1-201ENST00000312438 SOGA1O94964 1423 aa27.14■■□□□ 1.93
CLCF1-201ENST00000312438 EEA1Q15075 1411 aa27.14■■□□□ 1.93
CLCF1-201ENST00000312438 TOP2BQ02880 1626 aa27.12■■□□□ 1.93
CLCF1-201ENST00000312438 PRDM2Q13029 1718 aa27.08■■□□□ 1.93
CLCF1-201ENST00000312438 CSRNP3Q8WYN3 585 aa27.04■■□□□ 1.92
CLCF1-201ENST00000312438 BIVM-ERCC5R4GMW8 1640 aa27.04■■□□□ 1.92
CLCF1-201ENST00000312438 CUX1P39880 1505 aa27.04■■□□□ 1.92
CLCF1-201ENST00000312438 FANCD2Q9BXW9 1451 aa27.02■■□□□ 1.92
CLCF1-201ENST00000312438 NESP48681 1621 aa27.01■■□□□ 1.91
CLCF1-201ENST00000312438 LAMC3Q9Y6N6 1575 aa27.01■■□□□ 1.91
CLCF1-201ENST00000312438 RUSC2Q8N2Y8 1516 aa27■■□□□ 1.91
CLCF1-201ENST00000312438 EHMT2Q96KQ7 1210 aa26.96■■□□□ 1.91
CLCF1-201ENST00000312438 PDS5BQ9NTI5 1447 aa26.9■■□□□ 1.9
CLCF1-201ENST00000312438 CEP164Q9UPV0 1460 aa26.82■■□□□ 1.88
CLCF1-201ENST00000312438 KIF27Q86VH2 1401 aa26.76■■□□□ 1.87
CLCF1-201ENST00000312438 FGD5Q6ZNL6 1462 aa26.75■■□□□ 1.87
CLCF1-201ENST00000312438 DNMBPQ6XZF7 1577 aa26.75■■□□□ 1.87
CLCF1-201ENST00000312438 GOLGA3Q08378 1498 aa26.72■■□□□ 1.87
CLCF1-201ENST00000312438 TOPBP1Q92547 1522 aa26.72■■□□□ 1.87
CLCF1-201ENST00000312438 TNIKQ9UKE5 1360 aa26.72■■□□□ 1.87
CLCF1-201ENST00000312438 UBTFP17480 764 aaKnown RBP26.71■■□□□ 1.87
CLCF1-201ENST00000312438 KIF21BO75037 1637 aa26.66■■□□□ 1.86
CLCF1-201ENST00000312438 URB2Q14146 1524 aaKnown RBP26.65■■□□□ 1.86
CLCF1-201ENST00000312438 CUX2O14529 1486 aa26.63■■□□□ 1.85
CLCF1-201ENST00000312438 POLA1P09884 1462 aaPredicted RBP26.61■■□□□ 1.85
CLCF1-201ENST00000312438 PRXQ9BXM0 1461 aa26.58■■□□□ 1.85
CLCF1-201ENST00000312438 KIF21AQ7Z4S6 1674 aa26.56■■□□□ 1.84
CLCF1-201ENST00000312438 RAPGEF2Q9Y4G8 1499 aa26.55■■□□□ 1.84
CLCF1-201ENST00000312438 RAD54L2Q9Y4B4 1467 aa26.54■■□□□ 1.84
CLCF1-201ENST00000312438 IGF1RP08069 1367 aa26.54■■□□□ 1.84
CLCF1-201ENST00000312438 ABCA10Q8WWZ4 1543 aa26.53■■□□□ 1.84
CLCF1-201ENST00000312438 CEP162Q5TB80 1403 aa26.53■■□□□ 1.84
CLCF1-201ENST00000312438 ERICH3Q5RHP9 1530 aa26.49■■□□□ 1.83
CLCF1-201ENST00000312438 MRC2Q9UBG0 1479 aa26.48■■□□□ 1.83
CLCF1-201ENST00000312438 CARMIL1Q5VZK9 1371 aa26.41■■□□□ 1.82
CLCF1-201ENST00000312438 ERCC6Q03468 1493 aa26.37■■□□□ 1.81
CLCF1-201ENST00000312438 CLIP1P30622 1438 aa26.32■■□□□ 1.8
CLCF1-201ENST00000312438 TDRD9Q8NDG6 1382 aaKnown RBP26.32■■□□□ 1.8
CLCF1-201ENST00000312438 WDR62O43379 1518 aa26.3■■□□□ 1.8
CLCF1-201ENST00000312438 WDR97A6NE52 1622 aa26.27■■□□□ 1.8
CLCF1-201ENST00000312438 GAPVD1Q14C86 1478 aa26.26■■□□□ 1.79
CLCF1-201ENST00000312438 TARBP1Q13395 1621 aaKnown RBP26.26■■□□□ 1.79
CLCF1-201ENST00000312438 TRIM26Q12899 539 aaPredicted RBP26.25■■□□□ 1.79
CLCF1-201ENST00000312438 PCGF6Q9BYE7 350 aa26.25■■□□□ 1.79
CLCF1-201ENST00000312438 ABCA5Q8WWZ7 1642 aa26.21■■□□□ 1.79
CLCF1-201ENST00000312438 RANGAP1P46060 587 aaPredicted RBP26.21■■□□□ 1.79
CLCF1-201ENST00000312438 IFT140Q96RY7 1462 aa26.2■■□□□ 1.79
CLCF1-201ENST00000312438 CUL7Q14999 1698 aa26.16■■□□□ 1.78
CLCF1-201ENST00000312438 THOC2Q8NI27 1593 aaKnown RBP26.13■■□□□ 1.77
CLCF1-201ENST00000312438 AQRO60306 1485 aaKnown RBP eCLIP26.11■■□□□ 1.77
CLCF1-201ENST00000312438 VPS8Q8N3P4 1428 aa26.1■■□□□ 1.77
CLCF1-201ENST00000312438 PPARGC1BQ86YN6 1023 aaKnown RBP26.07■■□□□ 1.76
CLCF1-201ENST00000312438 GRIN2BQ13224 1484 aa26.04■■□□□ 1.76
CLCF1-201ENST00000312438 ZNF608Q9ULD9 1512 aaPredicted RBP26.03■■□□□ 1.76
CLCF1-201ENST00000312438 FHAD1B1AJZ9 1412 aa26■■□□□ 1.75
CLCF1-201ENST00000312438 ARAP1Q96P48 1450 aa25.99■■□□□ 1.75
CLCF1-201ENST00000312438 ARHGAP35Q9NRY4 1499 aa25.99■■□□□ 1.75
CLCF1-201ENST00000312438 APLP2Q06481 763 aa25.96■■□□□ 1.75
CLCF1-201ENST00000312438 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms