RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 NISCHQ9Y2I1 1504 aa37.74■■■■□ 3.63
CPSF4-201ENST00000292476 CCDC180Q9P1Z9 1646 aa33.52■■■□□ 2.96
CPSF4-201ENST00000292476 ABCC9O60706 1549 aa32.87■■■□□ 2.85
CPSF4-201ENST00000292476 DCAF8L2P0C7V8 631 aa31.63■■■□□ 2.65
CPSF4-201ENST00000292476 ZCCHC6Q5VYS8 1495 aaKnown RBP31.62■■■□□ 2.65
CPSF4-201ENST00000292476 RB1CC1Q8TDY2 1594 aa31.56■■■□□ 2.64
CPSF4-201ENST00000292476 NACADO15069 1562 aa31.51■■■□□ 2.63
CPSF4-201ENST00000292476 MYO15BQ96JP2 1530 aa31.27■■■□□ 2.6
CPSF4-201ENST00000292476 DCAF1Q9Y4B6 1507 aa31.24■■■□□ 2.59
CPSF4-201ENST00000292476 UNC13AQ9UPW8 1703 aa30.92■■■□□ 2.54
CPSF4-201ENST00000292476 PABPN1Q86U42 306 aaKnown RBP eCLIP30.74■■■□□ 2.51
CPSF4-201ENST00000292476 SCRIBQ14160 1630 aa30.68■■■□□ 2.5
CPSF4-201ENST00000292476 BICRAQ9NZM4 1560 aa30.63■■■□□ 2.49
CPSF4-201ENST00000292476 SHROOM4Q9ULL8 1493 aa30.52■■■□□ 2.48
CPSF4-201ENST00000292476 DNAJC5BQ9UF47 199 aa30.16■■■□□ 2.42
CPSF4-201ENST00000292476 EIF4G1Q04637 1599 aaKnown RBP29.82■■■□□ 2.36
CPSF4-201ENST00000292476 CC2D2AQ9P2K1 1620 aa29.71■■■□□ 2.35
CPSF4-201ENST00000292476 CECR2Q9BXF3 1484 aa29.5■■■□□ 2.31
CPSF4-201ENST00000292476 SUPT5HO00267 1087 aaKnown RBP29.43■■■□□ 2.3
CPSF4-201ENST00000292476 SMARCA4P51532 1647 aa29.3■■■□□ 2.28
CPSF4-201ENST00000292476 BAZ1AQ9NRL2 1556 aaPredicted RBP29.24■■■□□ 2.27
CPSF4-201ENST00000292476 RSF1Q96T23 1441 aaPredicted RBP29.17■■■□□ 2.26
CPSF4-201ENST00000292476 ATAD2BQ9ULI0 1458 aa29.12■■■□□ 2.25
CPSF4-201ENST00000292476 MROH2BQ7Z745 1585 aa29.12■■■□□ 2.25
CPSF4-201ENST00000292476 SMARCA2P51531 1590 aa29.07■■■□□ 2.24
CPSF4-201ENST00000292476 NCAPD3P42695 1498 aa29.07■■■□□ 2.24
CPSF4-201ENST00000292476 PEG3Q9GZU2 1588 aa28.96■■■□□ 2.23
CPSF4-201ENST00000292476 HMGXB3Q12766 1538 aa28.94■■■□□ 2.22
CPSF4-201ENST00000292476 BAZ1BQ9UIG0 1483 aaKnown RBP28.9■■■□□ 2.22
CPSF4-201ENST00000292476 WIZO95785 1651 aa28.84■■■□□ 2.21
CPSF4-201ENST00000292476 TOP2AP11388 1531 aaKnown RBP28.56■■■□□ 2.16
CPSF4-201ENST00000292476 NESP48681 1621 aa28.46■■■□□ 2.15
CPSF4-201ENST00000292476 LAMC3Q9Y6N6 1575 aa28.31■■■□□ 2.12
CPSF4-201ENST00000292476 ERCC6Q03468 1493 aa28.31■■■□□ 2.12
CPSF4-201ENST00000292476 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
CPSF4-201ENST00000292476 CCDC88BA6NC98 1476 aa28.23■■■□□ 2.11
CPSF4-201ENST00000292476 CHIC1Q5VXU3 224 aa28.16■■■□□ 2.1
CPSF4-201ENST00000292476 KIF21AQ7Z4S6 1674 aa28.12■■■□□ 2.09
CPSF4-201ENST00000292476 PDS5BQ9NTI5 1447 aa28.12■■■□□ 2.09
CPSF4-201ENST00000292476 CFTRP13569 1480 aa28.08■■■□□ 2.09
CPSF4-201ENST00000292476 THOC2Q8NI27 1593 aaKnown RBP27.99■■■□□ 2.07
CPSF4-201ENST00000292476 CUX2O14529 1486 aa27.94■■■□□ 2.06
CPSF4-201ENST00000292476 FANCD2Q9BXW9 1451 aa27.94■■■□□ 2.06
CPSF4-201ENST00000292476 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
CPSF4-201ENST00000292476 PRDM2Q13029 1718 aa27.9■■■□□ 2.06
CPSF4-201ENST00000292476 MRC2Q9UBG0 1479 aa27.85■■■□□ 2.05
CPSF4-201ENST00000292476 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
CPSF4-201ENST00000292476 WDR62O43379 1518 aa27.76■■■□□ 2.03
CPSF4-201ENST00000292476 URB2Q14146 1524 aaKnown RBP27.68■■■□□ 2.02
CPSF4-201ENST00000292476 ABCC8Q09428 1581 aa27.53■■■□□ 2
CPSF4-201ENST00000292476 TOPBP1Q92547 1522 aa27.51■■□□□ 1.99
CPSF4-201ENST00000292476 WRNQ14191 1432 aaPredicted RBP eCLIP27.5■■□□□ 1.995e-6■■■■■ 29.2
CPSF4-201ENST00000292476 DNMBPQ6XZF7 1577 aa27.46■■□□□ 1.99
CPSF4-201ENST00000292476 CUX1P39880 1505 aa27.31■■□□□ 1.96
CPSF4-201ENST00000292476 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
CPSF4-201ENST00000292476 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
CPSF4-201ENST00000292476 POLA1P09884 1462 aaPredicted RBP27.27■■□□□ 1.96
CPSF4-201ENST00000292476 TOP2BQ02880 1626 aa27.27■■□□□ 1.96
CPSF4-201ENST00000292476 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
CPSF4-201ENST00000292476 BIVM-ERCC5R4GMW8 1640 aa27.23■■□□□ 1.95
CPSF4-201ENST00000292476 FGD5Q6ZNL6 1462 aa27.22■■□□□ 1.95
CPSF4-201ENST00000292476 EEA1Q15075 1411 aa27.21■■□□□ 1.95
CPSF4-201ENST00000292476 TARBP1Q13395 1621 aaKnown RBP27.2■■□□□ 1.94
CPSF4-201ENST00000292476 RAD54L2Q9Y4B4 1467 aa27.19■■□□□ 1.94
CPSF4-201ENST00000292476 SOGA1O94964 1423 aa27.15■■□□□ 1.94
CPSF4-201ENST00000292476 FAM9AQ8IZU1 332 aaPredicted RBP27.13■■□□□ 1.93
CPSF4-201ENST00000292476 EIF4G3O43432 1585 aaKnown RBP27.12■■□□□ 1.93
CPSF4-201ENST00000292476 DNAJC5Q9H3Z4 198 aa27.08■■□□□ 1.93
CPSF4-201ENST00000292476 AQRO60306 1485 aaKnown RBP eCLIP27.08■■□□□ 1.932e-7■■■■■ 78.1
CPSF4-201ENST00000292476 TDRD9Q8NDG6 1382 aaKnown RBP27.03■■□□□ 1.92
CPSF4-201ENST00000292476 LOC105371045A0A1W2PR82 267 aa27■■□□□ 1.91
CPSF4-201ENST00000292476 WDR97A6NE52 1622 aa26.99■■□□□ 1.91
CPSF4-201ENST00000292476 CSRNP3Q8WYN3 585 aa26.97■■□□□ 1.91
CPSF4-201ENST00000292476 ABCA10Q8WWZ4 1543 aa26.92■■□□□ 1.9
CPSF4-201ENST00000292476 RUSC2Q8N2Y8 1516 aa26.88■■□□□ 1.89
CPSF4-201ENST00000292476 KIF27Q86VH2 1401 aa26.86■■□□□ 1.89
CPSF4-201ENST00000292476 GAPVD1Q14C86 1478 aa26.85■■□□□ 1.89
CPSF4-201ENST00000292476 ABCA5Q8WWZ7 1642 aa26.83■■□□□ 1.89
CPSF4-201ENST00000292476 GRIN2BQ13224 1484 aa26.82■■□□□ 1.88
CPSF4-201ENST00000292476 SNAPC4Q5SXM2 1469 aa26.82■■□□□ 1.88
CPSF4-201ENST00000292476 OSCARQ8IYS5 282 aa26.82■■□□□ 1.88
CPSF4-201ENST00000292476 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
CPSF4-201ENST00000292476 CHD1O14646 1710 aa26.79■■□□□ 1.88
CPSF4-201ENST00000292476 FBLN2P98095 1184 aa26.79■■□□□ 1.88
CPSF4-201ENST00000292476 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
CPSF4-201ENST00000292476 KIF21BO75037 1637 aa26.73■■□□□ 1.87
CPSF4-201ENST00000292476 GOLGA3Q08378 1498 aa26.73■■□□□ 1.87
CPSF4-201ENST00000292476 HRCP23327 699 aa26.73■■□□□ 1.87
CPSF4-201ENST00000292476 CHMP7Q8WUX9 453 aaPredicted RBP26.66■■□□□ 1.86
CPSF4-201ENST00000292476 EHMT2Q96KQ7 1210 aa26.65■■□□□ 1.86
CPSF4-201ENST00000292476 SYNJ2O15056 1496 aa26.65■■□□□ 1.86
CPSF4-201ENST00000292476 TNIKQ9UKE5 1360 aa26.65■■□□□ 1.86
CPSF4-201ENST00000292476 PCGF6Q9BYE7 350 aa26.61■■□□□ 1.85
CPSF4-201ENST00000292476 PRXQ9BXM0 1461 aa26.61■■□□□ 1.85
CPSF4-201ENST00000292476 UBTFP17480 764 aaKnown RBP26.6■■□□□ 1.85
CPSF4-201ENST00000292476 ERICH3Q5RHP9 1530 aa26.6■■□□□ 1.85
CPSF4-201ENST00000292476 ADAMTS12P58397 1594 aa26.58■■□□□ 1.85
CPSF4-201ENST00000292476 IGF1RP08069 1367 aa26.56■■□□□ 1.84
CPSF4-201ENST00000292476 RAPGEF2Q9Y4G8 1499 aa26.52■■□□□ 1.84
CPSF4-201ENST00000292476 FHAD1B1AJZ9 1412 aa26.51■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms